Hb_002299_030

Information

Type -
Description -
Location Contig2299: 90300-102935
Sequence    

Annotation

kegg
ID rcu:RCOM_0626480
description hypothetical protein
nr
ID XP_002526795.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLC6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0626480 PE=4 SV=1
Gene Ontology
ID GO:0005829
description calponin homology domain-containing protein ddb_g0272472 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23915: 91213-102861 , PASA_asmbl_23918: 91213-102177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002299_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007885_060 0.0892059675 - - replication factor C 40 kDa family protein [Populus trichocarpa]
3 Hb_003638_130 0.1103006595 - - PREDICTED: uncharacterized protein LOC105645779 [Jatropha curcas]
4 Hb_002686_170 0.1126181748 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
5 Hb_002524_010 0.1133115601 - - hypothetical protein POPTR_0006s20250g [Populus trichocarpa]
6 Hb_002311_180 0.114925003 - - drought-responsive family protein [Populus trichocarpa]
7 Hb_000181_090 0.1163284072 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
8 Hb_000005_220 0.1172180555 - - DNA ligase 1, partial [Glycine soja]
9 Hb_000424_060 0.1179867589 - - PREDICTED: myosin-15 [Jatropha curcas]
10 Hb_000069_380 0.1215288444 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
11 Hb_021576_100 0.1224752088 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
12 Hb_000094_300 0.1233884892 - - hypothetical protein POPTR_0002s26360g [Populus trichocarpa]
13 Hb_000212_330 0.123599072 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_002234_180 0.1239228125 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007533_010 0.1241450413 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
16 Hb_004586_300 0.1261492108 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
17 Hb_001922_170 0.1293870124 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
18 Hb_012395_230 0.1294580104 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
19 Hb_000521_080 0.1296156134 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
20 Hb_005730_120 0.1297880178 - - PREDICTED: protein WHI4 [Jatropha curcas]

Gene co-expression network

sample Hb_002299_030 Hb_002299_030 Hb_007885_060 Hb_007885_060 Hb_002299_030--Hb_007885_060 Hb_003638_130 Hb_003638_130 Hb_002299_030--Hb_003638_130 Hb_002686_170 Hb_002686_170 Hb_002299_030--Hb_002686_170 Hb_002524_010 Hb_002524_010 Hb_002299_030--Hb_002524_010 Hb_002311_180 Hb_002311_180 Hb_002299_030--Hb_002311_180 Hb_000181_090 Hb_000181_090 Hb_002299_030--Hb_000181_090 Hb_002820_050 Hb_002820_050 Hb_007885_060--Hb_002820_050 Hb_007885_060--Hb_000181_090 Hb_007885_060--Hb_002311_180 Hb_004453_130 Hb_004453_130 Hb_007885_060--Hb_004453_130 Hb_007533_010 Hb_007533_010 Hb_007885_060--Hb_007533_010 Hb_000245_220 Hb_000245_220 Hb_003638_130--Hb_000245_220 Hb_000005_220 Hb_000005_220 Hb_003638_130--Hb_000005_220 Hb_000134_270 Hb_000134_270 Hb_003638_130--Hb_000134_270 Hb_162286_010 Hb_162286_010 Hb_003638_130--Hb_162286_010 Hb_002889_010 Hb_002889_010 Hb_003638_130--Hb_002889_010 Hb_142368_010 Hb_142368_010 Hb_003638_130--Hb_142368_010 Hb_001981_030 Hb_001981_030 Hb_002686_170--Hb_001981_030 Hb_002197_020 Hb_002197_020 Hb_002686_170--Hb_002197_020 Hb_010368_010 Hb_010368_010 Hb_002686_170--Hb_010368_010 Hb_002876_230 Hb_002876_230 Hb_002686_170--Hb_002876_230 Hb_021576_100 Hb_021576_100 Hb_002686_170--Hb_021576_100 Hb_005000_170 Hb_005000_170 Hb_002686_170--Hb_005000_170 Hb_000086_380 Hb_000086_380 Hb_002524_010--Hb_000086_380 Hb_005291_030 Hb_005291_030 Hb_002524_010--Hb_005291_030 Hb_000092_100 Hb_000092_100 Hb_002524_010--Hb_000092_100 Hb_000030_190 Hb_000030_190 Hb_002524_010--Hb_000030_190 Hb_003641_060 Hb_003641_060 Hb_002524_010--Hb_003641_060 Hb_021596_030 Hb_021596_030 Hb_002524_010--Hb_021596_030 Hb_005730_120 Hb_005730_120 Hb_002311_180--Hb_005730_120 Hb_005271_220 Hb_005271_220 Hb_002311_180--Hb_005271_220 Hb_007416_300 Hb_007416_300 Hb_002311_180--Hb_007416_300 Hb_002872_030 Hb_002872_030 Hb_002311_180--Hb_002872_030 Hb_002311_180--Hb_021576_100 Hb_000424_060 Hb_000424_060 Hb_000181_090--Hb_000424_060 Hb_000181_090--Hb_007533_010 Hb_000105_050 Hb_000105_050 Hb_000181_090--Hb_000105_050 Hb_002284_150 Hb_002284_150 Hb_000181_090--Hb_002284_150 Hb_000053_110 Hb_000053_110 Hb_000181_090--Hb_000053_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6029 16.2856 25.6261 12.3122 10.6118 22.8108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.4034 14.2322 10.6548 13.9589 14.421

CAGE analysis