Hb_003638_130

Information

Type -
Description -
Location Contig3638: 165373-169634
Sequence    

Annotation

kegg
ID rcu:RCOM_1687510
description hypothetical protein
nr
ID XP_012086857.1
description PREDICTED: uncharacterized protein LOC105645779 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0S7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20565 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37412: 165414-169836 , PASA_asmbl_37413: 165746-166373 , PASA_asmbl_37414: 168358-169547 , PASA_asmbl_37415: 166800-168139
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003638_130 0.0 - - PREDICTED: uncharacterized protein LOC105645779 [Jatropha curcas]
2 Hb_000245_220 0.0856073609 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
3 Hb_000005_220 0.0892888054 - - DNA ligase 1, partial [Glycine soja]
4 Hb_000134_270 0.0893539698 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
5 Hb_162286_010 0.0904475792 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
6 Hb_002889_010 0.094937121 - - ubx domain-containing, putative [Ricinus communis]
7 Hb_142368_010 0.0961673618 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
8 Hb_000331_110 0.0985711141 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
9 Hb_002686_170 0.0989936038 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
10 Hb_005779_010 0.0997594709 - - catalytic, putative [Ricinus communis]
11 Hb_003878_110 0.1000249327 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
12 Hb_021576_100 0.1004269001 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
13 Hb_007533_010 0.103511466 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
14 Hb_000116_030 0.1042638477 - - PREDICTED: protein GRIP [Jatropha curcas]
15 Hb_000238_040 0.1068818257 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
16 Hb_002022_060 0.1075159986 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
17 Hb_000576_050 0.1076450539 - - Kinase superfamily protein [Theobroma cacao]
18 Hb_000816_250 0.107936145 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
19 Hb_002338_020 0.1084546377 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
20 Hb_001186_090 0.1087608914 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003638_130 Hb_003638_130 Hb_000245_220 Hb_000245_220 Hb_003638_130--Hb_000245_220 Hb_000005_220 Hb_000005_220 Hb_003638_130--Hb_000005_220 Hb_000134_270 Hb_000134_270 Hb_003638_130--Hb_000134_270 Hb_162286_010 Hb_162286_010 Hb_003638_130--Hb_162286_010 Hb_002889_010 Hb_002889_010 Hb_003638_130--Hb_002889_010 Hb_142368_010 Hb_142368_010 Hb_003638_130--Hb_142368_010 Hb_000331_110 Hb_000331_110 Hb_000245_220--Hb_000331_110 Hb_000816_250 Hb_000816_250 Hb_000245_220--Hb_000816_250 Hb_000245_220--Hb_162286_010 Hb_011618_050 Hb_011618_050 Hb_000245_220--Hb_011618_050 Hb_000035_500 Hb_000035_500 Hb_000245_220--Hb_000035_500 Hb_001186_090 Hb_001186_090 Hb_000245_220--Hb_001186_090 Hb_183612_040 Hb_183612_040 Hb_000005_220--Hb_183612_040 Hb_000035_110 Hb_000035_110 Hb_000005_220--Hb_000035_110 Hb_005337_090 Hb_005337_090 Hb_000005_220--Hb_005337_090 Hb_007441_020 Hb_007441_020 Hb_000005_220--Hb_007441_020 Hb_002445_100 Hb_002445_100 Hb_000005_220--Hb_002445_100 Hb_005779_010 Hb_005779_010 Hb_000005_220--Hb_005779_010 Hb_000044_040 Hb_000044_040 Hb_000134_270--Hb_000044_040 Hb_000318_120 Hb_000318_120 Hb_000134_270--Hb_000318_120 Hb_005289_040 Hb_005289_040 Hb_000134_270--Hb_005289_040 Hb_000134_270--Hb_002889_010 Hb_000665_120 Hb_000665_120 Hb_000134_270--Hb_000665_120 Hb_004020_040 Hb_004020_040 Hb_000134_270--Hb_004020_040 Hb_162286_010--Hb_000331_110 Hb_003878_110 Hb_003878_110 Hb_162286_010--Hb_003878_110 Hb_007007_060 Hb_007007_060 Hb_162286_010--Hb_007007_060 Hb_079526_030 Hb_079526_030 Hb_162286_010--Hb_079526_030 Hb_002374_260 Hb_002374_260 Hb_162286_010--Hb_002374_260 Hb_016777_040 Hb_016777_040 Hb_002889_010--Hb_016777_040 Hb_003861_050 Hb_003861_050 Hb_002889_010--Hb_003861_050 Hb_002471_240 Hb_002471_240 Hb_002889_010--Hb_002471_240 Hb_001377_310 Hb_001377_310 Hb_002889_010--Hb_001377_310 Hb_002889_010--Hb_000816_250 Hb_021576_100 Hb_021576_100 Hb_142368_010--Hb_021576_100 Hb_152175_010 Hb_152175_010 Hb_142368_010--Hb_152175_010 Hb_003001_080 Hb_003001_080 Hb_142368_010--Hb_003001_080 Hb_001227_030 Hb_001227_030 Hb_142368_010--Hb_001227_030 Hb_005137_050 Hb_005137_050 Hb_142368_010--Hb_005137_050 Hb_001862_210 Hb_001862_210 Hb_142368_010--Hb_001862_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.6414 18.3156 33.9376 14.5285 19.484 17.7389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6898 15.8866 9.88985 19.7096 18.6446

CAGE analysis