Hb_002686_170

Information

Type -
Description -
Location Contig2686: 105052-115422
Sequence    

Annotation

kegg
ID rcu:RCOM_1121850
description endonuclease, putative
nr
ID XP_012070474.1
description PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
swissprot
ID P26357
description TATA-box-binding protein OS=Solanum tuberosum GN=TBP PE=2 SV=1
trembl
ID A0A067KUE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02737 PE=4 SV=1
Gene Ontology
ID GO:0003677
description tata-box binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28009: 105041-111120 , PASA_asmbl_28011: 106957-107060 , PASA_asmbl_28013: 111531-115397 , PASA_asmbl_28014: 114420-115370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_170 0.0 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
2 Hb_001981_030 0.0686507606 - - nuclear acid binding protein, putative [Ricinus communis]
3 Hb_002197_020 0.0779935546 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
4 Hb_010368_010 0.0801597589 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
5 Hb_002876_230 0.082628339 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
6 Hb_021576_100 0.0826731689 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
7 Hb_005000_170 0.0850690362 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
8 Hb_007007_120 0.0851187194 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
9 Hb_004837_270 0.0853391003 - - PREDICTED: cinnamoyl-CoA reductase 1 [Jatropha curcas]
10 Hb_003861_060 0.0857047619 - - PREDICTED: treacle protein [Jatropha curcas]
11 Hb_032986_010 0.0863089916 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
12 Hb_001348_170 0.0885953592 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
13 Hb_005271_220 0.0892484325 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
14 Hb_142368_010 0.0901939498 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
15 Hb_002445_100 0.0902969988 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
16 Hb_001629_080 0.0912648294 - - hypothetical protein POPTR_0011s12610g [Populus trichocarpa]
17 Hb_000039_220 0.0929781467 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
18 Hb_001789_060 0.0935316485 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
19 Hb_001226_150 0.0938741907 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
20 Hb_005000_190 0.0941047729 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]

Gene co-expression network

sample Hb_002686_170 Hb_002686_170 Hb_001981_030 Hb_001981_030 Hb_002686_170--Hb_001981_030 Hb_002197_020 Hb_002197_020 Hb_002686_170--Hb_002197_020 Hb_010368_010 Hb_010368_010 Hb_002686_170--Hb_010368_010 Hb_002876_230 Hb_002876_230 Hb_002686_170--Hb_002876_230 Hb_021576_100 Hb_021576_100 Hb_002686_170--Hb_021576_100 Hb_005000_170 Hb_005000_170 Hb_002686_170--Hb_005000_170 Hb_005000_190 Hb_005000_190 Hb_001981_030--Hb_005000_190 Hb_000185_070 Hb_000185_070 Hb_001981_030--Hb_000185_070 Hb_001153_190 Hb_001153_190 Hb_001981_030--Hb_001153_190 Hb_001981_030--Hb_002197_020 Hb_000915_180 Hb_000915_180 Hb_001981_030--Hb_000915_180 Hb_000141_250 Hb_000141_250 Hb_002197_020--Hb_000141_250 Hb_000039_220 Hb_000039_220 Hb_002197_020--Hb_000039_220 Hb_007982_080 Hb_007982_080 Hb_002197_020--Hb_007982_080 Hb_002197_020--Hb_000185_070 Hb_002872_030 Hb_002872_030 Hb_002197_020--Hb_002872_030 Hb_013358_040 Hb_013358_040 Hb_010368_010--Hb_013358_040 Hb_008013_050 Hb_008013_050 Hb_010368_010--Hb_008013_050 Hb_000699_030 Hb_000699_030 Hb_010368_010--Hb_000699_030 Hb_000729_030 Hb_000729_030 Hb_010368_010--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_010368_010--Hb_000336_150 Hb_000069_380 Hb_000069_380 Hb_010368_010--Hb_000069_380 Hb_004052_080 Hb_004052_080 Hb_002876_230--Hb_004052_080 Hb_000339_040 Hb_000339_040 Hb_002876_230--Hb_000339_040 Hb_001456_060 Hb_001456_060 Hb_002876_230--Hb_001456_060 Hb_007007_120 Hb_007007_120 Hb_002876_230--Hb_007007_120 Hb_009911_030 Hb_009911_030 Hb_002876_230--Hb_009911_030 Hb_000331_110 Hb_000331_110 Hb_002876_230--Hb_000331_110 Hb_142368_010 Hb_142368_010 Hb_021576_100--Hb_142368_010 Hb_000308_030 Hb_000308_030 Hb_021576_100--Hb_000308_030 Hb_005337_090 Hb_005337_090 Hb_021576_100--Hb_005337_090 Hb_073973_130 Hb_073973_130 Hb_021576_100--Hb_073973_130 Hb_000005_220 Hb_000005_220 Hb_021576_100--Hb_000005_220 Hb_079526_030 Hb_079526_030 Hb_021576_100--Hb_079526_030 Hb_001226_150 Hb_001226_150 Hb_005000_170--Hb_001226_150 Hb_007894_150 Hb_007894_150 Hb_005000_170--Hb_007894_150 Hb_000329_800 Hb_000329_800 Hb_005000_170--Hb_000329_800 Hb_004846_220 Hb_004846_220 Hb_005000_170--Hb_004846_220 Hb_002592_060 Hb_002592_060 Hb_005000_170--Hb_002592_060 Hb_000441_220 Hb_000441_220 Hb_005000_170--Hb_000441_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.189 11.2978 21.3231 10.2026 10.4367 12.7776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2791 11.9053 13.778 12.9191 11.0258

CAGE analysis