Hb_000529_210

Information

Type -
Description -
Location Contig529: 277571-279100
Sequence    

Annotation

kegg
ID rcu:RCOM_1054730
description ATP binding protein, putative
nr
ID XP_012081666.1
description PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
swissprot
ID P0CB23
description Uncharacterized protein At4g38062 OS=Arabidopsis thaliana GN=At4g38062 PE=4 SV=1
trembl
ID A0A067K0N9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18701 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47250: 277856-278230 , PASA_asmbl_47251: 278494-278655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_210 0.0 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
2 Hb_001195_570 0.1257834087 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
3 Hb_004785_190 0.1270783179 - - PHD finger family protein [Populus trichocarpa]
4 Hb_007123_070 0.128344605 - - -
5 Hb_000175_090 0.1321554484 - - conserved hypothetical protein [Ricinus communis]
6 Hb_092337_020 0.1337268532 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
7 Hb_000152_230 0.1369163766 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
8 Hb_001898_240 0.1375067263 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
9 Hb_003142_070 0.1388334354 - - hypothetical protein F383_14657 [Gossypium arboreum]
10 Hb_004363_010 0.1407278816 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
11 Hb_001586_040 0.1413291705 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
12 Hb_000976_260 0.1424637173 - - -
13 Hb_033153_070 0.1425768741 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
14 Hb_004127_010 0.1438756391 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Malus domestica]
15 Hb_000390_130 0.1443470645 - - PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]
16 Hb_021576_040 0.1446914707 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009270_040 0.1454487867 - - -
18 Hb_002025_110 0.1459312163 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
19 Hb_000261_250 0.1481162637 - - elongation factor 1-alpha [Lepidium sativum]
20 Hb_000014_170 0.1501318987 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000529_210 Hb_000529_210 Hb_001195_570 Hb_001195_570 Hb_000529_210--Hb_001195_570 Hb_004785_190 Hb_004785_190 Hb_000529_210--Hb_004785_190 Hb_007123_070 Hb_007123_070 Hb_000529_210--Hb_007123_070 Hb_000175_090 Hb_000175_090 Hb_000529_210--Hb_000175_090 Hb_092337_020 Hb_092337_020 Hb_000529_210--Hb_092337_020 Hb_000152_230 Hb_000152_230 Hb_000529_210--Hb_000152_230 Hb_033095_020 Hb_033095_020 Hb_001195_570--Hb_033095_020 Hb_001168_040 Hb_001168_040 Hb_001195_570--Hb_001168_040 Hb_011512_080 Hb_011512_080 Hb_001195_570--Hb_011512_080 Hb_001288_080 Hb_001288_080 Hb_001195_570--Hb_001288_080 Hb_001135_020 Hb_001135_020 Hb_001195_570--Hb_001135_020 Hb_054865_090 Hb_054865_090 Hb_001195_570--Hb_054865_090 Hb_000926_310 Hb_000926_310 Hb_004785_190--Hb_000926_310 Hb_000610_010 Hb_000610_010 Hb_004785_190--Hb_000610_010 Hb_000661_140 Hb_000661_140 Hb_004785_190--Hb_000661_140 Hb_003687_230 Hb_003687_230 Hb_004785_190--Hb_003687_230 Hb_000009_530 Hb_000009_530 Hb_004785_190--Hb_000009_530 Hb_002296_050 Hb_002296_050 Hb_004785_190--Hb_002296_050 Hb_007123_070--Hb_000152_230 Hb_007123_070--Hb_092337_020 Hb_007123_070--Hb_000175_090 Hb_000563_330 Hb_000563_330 Hb_007123_070--Hb_000563_330 Hb_089889_020 Hb_089889_020 Hb_007123_070--Hb_089889_020 Hb_141532_010 Hb_141532_010 Hb_000175_090--Hb_141532_010 Hb_004363_010 Hb_004363_010 Hb_000175_090--Hb_004363_010 Hb_000976_260 Hb_000976_260 Hb_000175_090--Hb_000976_260 Hb_012114_060 Hb_012114_060 Hb_000175_090--Hb_012114_060 Hb_002292_010 Hb_002292_010 Hb_000175_090--Hb_002292_010 Hb_000261_250 Hb_000261_250 Hb_000175_090--Hb_000261_250 Hb_092337_020--Hb_000563_330 Hb_063805_010 Hb_063805_010 Hb_092337_020--Hb_063805_010 Hb_027472_210 Hb_027472_210 Hb_092337_020--Hb_027472_210 Hb_092337_020--Hb_000261_250 Hb_092337_020--Hb_000175_090 Hb_001898_240 Hb_001898_240 Hb_000152_230--Hb_001898_240 Hb_006261_090 Hb_006261_090 Hb_000152_230--Hb_006261_090 Hb_000313_300 Hb_000313_300 Hb_000152_230--Hb_000313_300 Hb_000261_110 Hb_000261_110 Hb_000152_230--Hb_000261_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23911 1.24035 1.11622 0.447161 1.15322 1.27372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.77968 1.43113 0.272653 0.0817913 0.606853

CAGE analysis