Hb_001195_570

Information

Type -
Description -
Location Contig1195: 371020-380608
Sequence    

Annotation

kegg
ID rcu:RCOM_1593780
description peroxisomal biogenesis factor, putative
nr
ID XP_012071790.1
description PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
swissprot
ID Q9FZF1
description Peroxisomal membrane protein 11A OS=Arabidopsis thaliana GN=PEX11A PE=1 SV=1
trembl
ID A0A067KQQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04397 PE=4 SV=1
Gene Ontology
ID GO:0005779
description peroxisomal membrane protein 11a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_570 0.0 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
2 Hb_033095_020 0.1136399479 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001168_040 0.1216836365 - - -
4 Hb_011512_080 0.1218959808 - - hypothetical protein JCGZ_06424 [Jatropha curcas]
5 Hb_001288_080 0.1226654772 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
6 Hb_001135_020 0.1229168411 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
7 Hb_054865_090 0.125405813 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
8 Hb_000529_210 0.1257834087 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
9 Hb_000710_010 0.1258461555 - - PREDICTED: uncharacterized protein LOC105630356 [Jatropha curcas]
10 Hb_000144_100 0.1275229242 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
11 Hb_021576_040 0.1287105824 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002292_010 0.1303606804 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
13 Hb_002025_110 0.1340004292 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
14 Hb_001623_140 0.1360652177 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
15 Hb_017469_020 0.1361567094 - - -
16 Hb_003371_150 0.1366440005 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
17 Hb_007007_050 0.1373849504 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
18 Hb_001720_010 0.1384169738 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
19 Hb_001348_150 0.1386283904 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
20 Hb_002272_020 0.1390167859 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_570 Hb_001195_570 Hb_033095_020 Hb_033095_020 Hb_001195_570--Hb_033095_020 Hb_001168_040 Hb_001168_040 Hb_001195_570--Hb_001168_040 Hb_011512_080 Hb_011512_080 Hb_001195_570--Hb_011512_080 Hb_001288_080 Hb_001288_080 Hb_001195_570--Hb_001288_080 Hb_001135_020 Hb_001135_020 Hb_001195_570--Hb_001135_020 Hb_054865_090 Hb_054865_090 Hb_001195_570--Hb_054865_090 Hb_000140_080 Hb_000140_080 Hb_033095_020--Hb_000140_080 Hb_000394_190 Hb_000394_190 Hb_033095_020--Hb_000394_190 Hb_033095_020--Hb_001168_040 Hb_008511_030 Hb_008511_030 Hb_033095_020--Hb_008511_030 Hb_002025_110 Hb_002025_110 Hb_033095_020--Hb_002025_110 Hb_012799_110 Hb_012799_110 Hb_033095_020--Hb_012799_110 Hb_001623_140 Hb_001623_140 Hb_001168_040--Hb_001623_140 Hb_001168_040--Hb_001288_080 Hb_000421_120 Hb_000421_120 Hb_001168_040--Hb_000421_120 Hb_000406_240 Hb_000406_240 Hb_001168_040--Hb_000406_240 Hb_001168_040--Hb_000394_190 Hb_004970_090 Hb_004970_090 Hb_011512_080--Hb_004970_090 Hb_112798_020 Hb_112798_020 Hb_011512_080--Hb_112798_020 Hb_002272_020 Hb_002272_020 Hb_011512_080--Hb_002272_020 Hb_000563_230 Hb_000563_230 Hb_011512_080--Hb_000563_230 Hb_005288_170 Hb_005288_170 Hb_011512_080--Hb_005288_170 Hb_000275_170 Hb_000275_170 Hb_011512_080--Hb_000275_170 Hb_001720_010 Hb_001720_010 Hb_001288_080--Hb_001720_010 Hb_001610_110 Hb_001610_110 Hb_001288_080--Hb_001610_110 Hb_052764_050 Hb_052764_050 Hb_001288_080--Hb_052764_050 Hb_001288_080--Hb_001623_140 Hb_004324_340 Hb_004324_340 Hb_001288_080--Hb_004324_340 Hb_002292_010 Hb_002292_010 Hb_001135_020--Hb_002292_010 Hb_001135_020--Hb_001288_080 Hb_007007_050 Hb_007007_050 Hb_001135_020--Hb_007007_050 Hb_001828_200 Hb_001828_200 Hb_001135_020--Hb_001828_200 Hb_001135_020--Hb_004324_340 Hb_141532_010 Hb_141532_010 Hb_001135_020--Hb_141532_010 Hb_054865_090--Hb_000275_170 Hb_054865_090--Hb_001610_110 Hb_005332_070 Hb_005332_070 Hb_054865_090--Hb_005332_070 Hb_000663_040 Hb_000663_040 Hb_054865_090--Hb_000663_040 Hb_000244_300 Hb_000244_300 Hb_054865_090--Hb_000244_300 Hb_005694_110 Hb_005694_110 Hb_054865_090--Hb_005694_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.591067 0.586983 0.251988 0.188869 0.436727 0.319917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.365645 0.55482 0.116457 0.0736768 0.12974

CAGE analysis