Hb_089889_020

Information

Type transcription factor
Description TF Family: B3
Location Contig89889: 11805-19090
Sequence    

Annotation

kegg
ID rcu:RCOM_1258760
description transcription factor, putative
nr
ID XP_012074390.1
description PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
swissprot
ID Q9FNI3
description B3 domain-containing protein At5g06250 OS=Arabidopsis thaliana GN=At5g06250 PE=2 SV=1
trembl
ID A0A067KIX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08825 PE=4 SV=1
Gene Ontology
ID GO:0006355
description b3 domain-containing protein at2g36080-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61808: 11721-18981 , PASA_asmbl_61809: 11778-18981
cDNA
(Sanger)
(ID:Location)		 025_C18.ab1: 13828-18944 , 028_B18.ab1: 15945-18944 , 033_A13.ab1: 15082-18981 , 033_D17.ab1: 15849-18981 , 048_C16.ab1: 15097-18981 , 052_L15.ab1: 15834-18981 , 053_J15.ab1: 15142-18981

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089889_020 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
2 Hb_009838_130 0.1151554669 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
3 Hb_007123_070 0.1197626066 - - -
4 Hb_000996_180 0.1209046428 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
5 Hb_001910_020 0.1285555259 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
6 Hb_107847_010 0.132533075 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
7 Hb_017259_010 0.1340243742 - - -
8 Hb_002411_180 0.1344007847 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
9 Hb_000107_170 0.1353696669 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
10 Hb_009693_030 0.1357906387 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000661_160 0.1389814104 - - hexokinase [Manihot esculenta]
12 Hb_003091_010 0.1399658699 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
13 Hb_000261_110 0.1399733388 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
14 Hb_000365_160 0.1412496028 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
15 Hb_000920_280 0.1423494698 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
16 Hb_000302_160 0.1512008725 - - PREDICTED: uncharacterized protein LOC105648403 [Jatropha curcas]
17 Hb_004899_030 0.153651889 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
18 Hb_008518_050 0.1563313789 - - hypothetical protein F383_31148 [Gossypium arboreum]
19 Hb_004374_150 0.156645395 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
20 Hb_175612_010 0.1575321671 transcription factor TF Family: MBF1 orf [Ricinus communis]

Gene co-expression network

sample Hb_089889_020 Hb_089889_020 Hb_009838_130 Hb_009838_130 Hb_089889_020--Hb_009838_130 Hb_007123_070 Hb_007123_070 Hb_089889_020--Hb_007123_070 Hb_000996_180 Hb_000996_180 Hb_089889_020--Hb_000996_180 Hb_001910_020 Hb_001910_020 Hb_089889_020--Hb_001910_020 Hb_107847_010 Hb_107847_010 Hb_089889_020--Hb_107847_010 Hb_017259_010 Hb_017259_010 Hb_089889_020--Hb_017259_010 Hb_009838_130--Hb_017259_010 Hb_002411_180 Hb_002411_180 Hb_009838_130--Hb_002411_180 Hb_008518_050 Hb_008518_050 Hb_009838_130--Hb_008518_050 Hb_004374_150 Hb_004374_150 Hb_009838_130--Hb_004374_150 Hb_000529_080 Hb_000529_080 Hb_009838_130--Hb_000529_080 Hb_007643_050 Hb_007643_050 Hb_009838_130--Hb_007643_050 Hb_000152_230 Hb_000152_230 Hb_007123_070--Hb_000152_230 Hb_092337_020 Hb_092337_020 Hb_007123_070--Hb_092337_020 Hb_000175_090 Hb_000175_090 Hb_007123_070--Hb_000175_090 Hb_000563_330 Hb_000563_330 Hb_007123_070--Hb_000563_330 Hb_000529_210 Hb_000529_210 Hb_007123_070--Hb_000529_210 Hb_000996_180--Hb_107847_010 Hb_009693_030 Hb_009693_030 Hb_000996_180--Hb_009693_030 Hb_000152_670 Hb_000152_670 Hb_000996_180--Hb_000152_670 Hb_000996_180--Hb_009838_130 Hb_000996_180--Hb_002411_180 Hb_035318_010 Hb_035318_010 Hb_001910_020--Hb_035318_010 Hb_000785_030 Hb_000785_030 Hb_001910_020--Hb_000785_030 Hb_152453_010 Hb_152453_010 Hb_001910_020--Hb_152453_010 Hb_003091_010 Hb_003091_010 Hb_001910_020--Hb_003091_010 Hb_073973_160 Hb_073973_160 Hb_001910_020--Hb_073973_160 Hb_001882_040 Hb_001882_040 Hb_001910_020--Hb_001882_040 Hb_107847_010--Hb_009838_130 Hb_000504_170 Hb_000504_170 Hb_107847_010--Hb_000504_170 Hb_107847_010--Hb_009693_030 Hb_000264_060 Hb_000264_060 Hb_107847_010--Hb_000264_060 Hb_001158_220 Hb_001158_220 Hb_017259_010--Hb_001158_220 Hb_017259_010--Hb_007643_050 Hb_025236_040 Hb_025236_040 Hb_017259_010--Hb_025236_040 Hb_004447_030 Hb_004447_030 Hb_017259_010--Hb_004447_030 Hb_017259_010--Hb_000529_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1883 13.464 16.1841 9.1667 29.4867 31.3966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2387 11.0954 1.09422 1.66506 2.98995

CAGE analysis