Hb_000152_230

Information

Type -
Description -
Location Contig152: 182454-183628
Sequence    

Annotation

kegg
ID pop:POPTR_0015s14290g
description POPTRDRAFT_575707; hydroxyproline-rich glycoprotein
nr
ID XP_012090383.1
description PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12967: 183363-183616
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_230 0.0 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
2 Hb_007123_070 0.1058735838 - - -
3 Hb_001898_240 0.1277991271 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
4 Hb_006261_090 0.1295329648 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
5 Hb_000313_300 0.133419964 - - PREDICTED: F-box protein SKIP19-like [Jatropha curcas]
6 Hb_000261_110 0.1335102981 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
7 Hb_000529_210 0.1369163766 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
8 Hb_002228_110 0.1392823644 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
9 Hb_000926_180 0.1406069345 - - proline synthetase associated protein, putative [Ricinus communis]
10 Hb_001195_570 0.1434932619 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
11 Hb_000175_090 0.1457891158 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003994_140 0.148013337 - - conserved hypothetical protein [Ricinus communis]
13 Hb_021576_040 0.1496711977 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002292_010 0.1502167206 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
15 Hb_092337_020 0.1507891725 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
16 Hb_188996_010 0.1509259043 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002043_090 0.1525954097 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
18 Hb_002026_140 0.1542939497 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
19 Hb_000144_100 0.1545275789 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
20 Hb_033095_020 0.1557808578 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000152_230 Hb_000152_230 Hb_007123_070 Hb_007123_070 Hb_000152_230--Hb_007123_070 Hb_001898_240 Hb_001898_240 Hb_000152_230--Hb_001898_240 Hb_006261_090 Hb_006261_090 Hb_000152_230--Hb_006261_090 Hb_000313_300 Hb_000313_300 Hb_000152_230--Hb_000313_300 Hb_000261_110 Hb_000261_110 Hb_000152_230--Hb_000261_110 Hb_000529_210 Hb_000529_210 Hb_000152_230--Hb_000529_210 Hb_092337_020 Hb_092337_020 Hb_007123_070--Hb_092337_020 Hb_000175_090 Hb_000175_090 Hb_007123_070--Hb_000175_090 Hb_000563_330 Hb_000563_330 Hb_007123_070--Hb_000563_330 Hb_089889_020 Hb_089889_020 Hb_007123_070--Hb_089889_020 Hb_007123_070--Hb_000529_210 Hb_001898_240--Hb_006261_090 Hb_001864_070 Hb_001864_070 Hb_001898_240--Hb_001864_070 Hb_000009_530 Hb_000009_530 Hb_001898_240--Hb_000009_530 Hb_002228_110 Hb_002228_110 Hb_001898_240--Hb_002228_110 Hb_000610_010 Hb_000610_010 Hb_001898_240--Hb_000610_010 Hb_003621_020 Hb_003621_020 Hb_001898_240--Hb_003621_020 Hb_006261_090--Hb_002228_110 Hb_000329_590 Hb_000329_590 Hb_006261_090--Hb_000329_590 Hb_004648_090 Hb_004648_090 Hb_006261_090--Hb_004648_090 Hb_004128_200 Hb_004128_200 Hb_006261_090--Hb_004128_200 Hb_001671_040 Hb_001671_040 Hb_006261_090--Hb_001671_040 Hb_000106_130 Hb_000106_130 Hb_000313_300--Hb_000106_130 Hb_097783_020 Hb_097783_020 Hb_000313_300--Hb_097783_020 Hb_000211_110 Hb_000211_110 Hb_000313_300--Hb_000211_110 Hb_001357_380 Hb_001357_380 Hb_000313_300--Hb_001357_380 Hb_000785_030 Hb_000785_030 Hb_000313_300--Hb_000785_030 Hb_006916_040 Hb_006916_040 Hb_000313_300--Hb_006916_040 Hb_000261_110--Hb_001357_380 Hb_000261_110--Hb_000313_300 Hb_000661_160 Hb_000661_160 Hb_000261_110--Hb_000661_160 Hb_017259_010 Hb_017259_010 Hb_000261_110--Hb_017259_010 Hb_012799_110 Hb_012799_110 Hb_000261_110--Hb_012799_110 Hb_033095_020 Hb_033095_020 Hb_000261_110--Hb_033095_020 Hb_001195_570 Hb_001195_570 Hb_000529_210--Hb_001195_570 Hb_004785_190 Hb_004785_190 Hb_000529_210--Hb_004785_190 Hb_000529_210--Hb_000175_090 Hb_000529_210--Hb_092337_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.90145 2.3186 2.25019 1.26821 2.12509 1.68095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75451 1.78038 0.244268 0.251163 0.361786

CAGE analysis