Hb_001300_100

Information

Type -
Description -
Location Contig1300: 80514-84666
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08965: 81576-82403 , PASA_asmbl_08966: 83748-84553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_100 0.0 - - -
2 Hb_063805_010 0.1253353692 - - -
3 Hb_058551_010 0.1475327394 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_027472_210 0.1605968786 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
5 Hb_002890_150 0.1612068507 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
6 Hb_013405_150 0.1614005642 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
7 Hb_002947_040 0.1617348174 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
8 Hb_000045_320 0.1655666863 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
9 Hb_000173_150 0.1661135117 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
10 Hb_005610_080 0.1705573488 - - conserved hypothetical protein [Ricinus communis]
11 Hb_044155_010 0.171559041 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
12 Hb_000077_010 0.1716566145 - - unnamed protein product [Vitis vinifera]
13 Hb_000563_330 0.1720381298 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_000003_300 0.1736304709 - - PREDICTED: uncharacterized protein LOC105631182 [Jatropha curcas]
15 Hb_087086_020 0.173972828 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
16 Hb_003119_050 0.1740161575 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
17 Hb_000169_190 0.176414123 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
18 Hb_002739_130 0.1801135079 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
19 Hb_000836_430 0.1801993179 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
20 Hb_001807_030 0.1812451506 - - PREDICTED: CDT1-like protein b [Jatropha curcas]

Gene co-expression network

sample Hb_001300_100 Hb_001300_100 Hb_063805_010 Hb_063805_010 Hb_001300_100--Hb_063805_010 Hb_058551_010 Hb_058551_010 Hb_001300_100--Hb_058551_010 Hb_027472_210 Hb_027472_210 Hb_001300_100--Hb_027472_210 Hb_002890_150 Hb_002890_150 Hb_001300_100--Hb_002890_150 Hb_013405_150 Hb_013405_150 Hb_001300_100--Hb_013405_150 Hb_002947_040 Hb_002947_040 Hb_001300_100--Hb_002947_040 Hb_063805_010--Hb_027472_210 Hb_092337_020 Hb_092337_020 Hb_063805_010--Hb_092337_020 Hb_000563_330 Hb_000563_330 Hb_063805_010--Hb_000563_330 Hb_063805_010--Hb_002947_040 Hb_042509_030 Hb_042509_030 Hb_063805_010--Hb_042509_030 Hb_058551_010--Hb_000563_330 Hb_003994_140 Hb_003994_140 Hb_058551_010--Hb_003994_140 Hb_000173_150 Hb_000173_150 Hb_058551_010--Hb_000173_150 Hb_000069_590 Hb_000069_590 Hb_058551_010--Hb_000069_590 Hb_039605_010 Hb_039605_010 Hb_058551_010--Hb_039605_010 Hb_000735_050 Hb_000735_050 Hb_058551_010--Hb_000735_050 Hb_027472_210--Hb_092337_020 Hb_027472_210--Hb_000563_330 Hb_007083_010 Hb_007083_010 Hb_027472_210--Hb_007083_010 Hb_000169_190 Hb_000169_190 Hb_027472_210--Hb_000169_190 Hb_005291_040 Hb_005291_040 Hb_027472_210--Hb_005291_040 Hb_000077_120 Hb_000077_120 Hb_002890_150--Hb_000077_120 Hb_003849_040 Hb_003849_040 Hb_002890_150--Hb_003849_040 Hb_000985_040 Hb_000985_040 Hb_002890_150--Hb_000985_040 Hb_044155_010 Hb_044155_010 Hb_002890_150--Hb_044155_010 Hb_005054_190 Hb_005054_190 Hb_002890_150--Hb_005054_190 Hb_005610_080 Hb_005610_080 Hb_002890_150--Hb_005610_080 Hb_013405_150--Hb_000077_120 Hb_000890_010 Hb_000890_010 Hb_013405_150--Hb_000890_010 Hb_013405_150--Hb_044155_010 Hb_006132_040 Hb_006132_040 Hb_013405_150--Hb_006132_040 Hb_000139_220 Hb_000139_220 Hb_013405_150--Hb_000139_220 Hb_000343_150 Hb_000343_150 Hb_013405_150--Hb_000343_150 Hb_002157_260 Hb_002157_260 Hb_002947_040--Hb_002157_260 Hb_001040_040 Hb_001040_040 Hb_002947_040--Hb_001040_040 Hb_007951_100 Hb_007951_100 Hb_002947_040--Hb_007951_100 Hb_002947_040--Hb_000563_330 Hb_005188_060 Hb_005188_060 Hb_002947_040--Hb_005188_060 Hb_009252_100 Hb_009252_100 Hb_002947_040--Hb_009252_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.699 75.1141 115.407 11.1171 89.7489 33.0492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2297 21.7738 19.2647 9.01259 12.1303

CAGE analysis