Hb_000173_150

Information

Type -
Description -
Location Contig173: 106540-110632
Sequence    

Annotation

kegg
ID pop:POPTR_0010s03190g
description POPTRDRAFT_725740; hypothetical protein
nr
ID XP_012069521.1
description PREDICTED: transmembrane protein 64 [Jatropha curcas]
swissprot
ID Q55909
description TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1
trembl
ID A0A067KYP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02101 PE=4 SV=1
Gene Ontology
ID GO:0015824
description transmembrane protein 64-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16423: 106627-110628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_150 0.0 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
2 Hb_000165_140 0.0922378678 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
3 Hb_058551_010 0.092359123 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000230_430 0.0953303606 - - catalytic, putative [Ricinus communis]
5 Hb_000069_590 0.0981087453 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
6 Hb_002739_130 0.1013413336 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
7 Hb_000735_050 0.1020770673 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
8 Hb_001269_200 0.1021748303 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
9 Hb_016734_090 0.1022974366 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
10 Hb_000336_110 0.1026448382 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
11 Hb_000661_020 0.1030890003 - - BnaC08g27190D [Brassica napus]
12 Hb_003086_190 0.105129682 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
13 Hb_031711_010 0.1070225289 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
14 Hb_000045_320 0.1070503647 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
15 Hb_005188_060 0.1078845388 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
16 Hb_000563_330 0.1079533697 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_000625_120 0.1113623214 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
18 Hb_167381_020 0.1141814875 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
19 Hb_004631_190 0.1144570767 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
20 Hb_006452_160 0.1157604514 - - structural constituent of ribosome, putative [Ricinus communis]

Gene co-expression network

sample Hb_000173_150 Hb_000173_150 Hb_000165_140 Hb_000165_140 Hb_000173_150--Hb_000165_140 Hb_058551_010 Hb_058551_010 Hb_000173_150--Hb_058551_010 Hb_000230_430 Hb_000230_430 Hb_000173_150--Hb_000230_430 Hb_000069_590 Hb_000069_590 Hb_000173_150--Hb_000069_590 Hb_002739_130 Hb_002739_130 Hb_000173_150--Hb_002739_130 Hb_000735_050 Hb_000735_050 Hb_000173_150--Hb_000735_050 Hb_006915_020 Hb_006915_020 Hb_000165_140--Hb_006915_020 Hb_027380_030 Hb_027380_030 Hb_000165_140--Hb_027380_030 Hb_016734_090 Hb_016734_090 Hb_000165_140--Hb_016734_090 Hb_000599_170 Hb_000599_170 Hb_000165_140--Hb_000599_170 Hb_002092_100 Hb_002092_100 Hb_000165_140--Hb_002092_100 Hb_000563_330 Hb_000563_330 Hb_058551_010--Hb_000563_330 Hb_003994_140 Hb_003994_140 Hb_058551_010--Hb_003994_140 Hb_058551_010--Hb_000069_590 Hb_039605_010 Hb_039605_010 Hb_058551_010--Hb_039605_010 Hb_058551_010--Hb_000735_050 Hb_001243_060 Hb_001243_060 Hb_000230_430--Hb_001243_060 Hb_002902_020 Hb_002902_020 Hb_000230_430--Hb_002902_020 Hb_004631_190 Hb_004631_190 Hb_000230_430--Hb_004631_190 Hb_000264_070 Hb_000264_070 Hb_000230_430--Hb_000264_070 Hb_009780_100 Hb_009780_100 Hb_000230_430--Hb_009780_100 Hb_118840_050 Hb_118840_050 Hb_000230_430--Hb_118840_050 Hb_000069_590--Hb_000735_050 Hb_000186_330 Hb_000186_330 Hb_000069_590--Hb_000186_330 Hb_000069_590--Hb_000230_430 Hb_000069_590--Hb_003994_140 Hb_000718_070 Hb_000718_070 Hb_000069_590--Hb_000718_070 Hb_000336_110 Hb_000336_110 Hb_000069_590--Hb_000336_110 Hb_006452_160 Hb_006452_160 Hb_002739_130--Hb_006452_160 Hb_002739_130--Hb_016734_090 Hb_002739_130--Hb_000563_330 Hb_000661_020 Hb_000661_020 Hb_002739_130--Hb_000661_020 Hb_011918_050 Hb_011918_050 Hb_002739_130--Hb_011918_050 Hb_000679_340 Hb_000679_340 Hb_002739_130--Hb_000679_340 Hb_000735_050--Hb_003994_140 Hb_000735_050--Hb_000718_070 Hb_000735_050--Hb_000186_330 Hb_000735_050--Hb_000336_110 Hb_001832_130 Hb_001832_130 Hb_000735_050--Hb_001832_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.2422 72.8215 67.2873 32.6355 83.156 50.2839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.055 13.6606 17.5372 17.9112 15.719

CAGE analysis