Hb_007083_010

Information

Type -
Description -
Location Contig7083: 11552-14162
Sequence    

Annotation

kegg
ID mtr:MTR_127s0020
description Ubiquitin carboxyl-terminal hydrolase family protein
nr
ID XP_010243835.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A067E1J8
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0374612mg PE=4 SV=1
Gene Ontology
ID GO:0008234
description 2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55172: 11433-11933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007083_010 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
2 Hb_014720_170 0.0879052469 - - glutaredoxin-1, grx1, putative [Ricinus communis]
3 Hb_027472_210 0.1168437396 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
4 Hb_000504_170 0.1230880372 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
5 Hb_002043_090 0.1284748431 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
6 Hb_002026_140 0.1360772948 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
7 Hb_001427_050 0.1378055102 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
8 Hb_001828_200 0.1411260859 - - ribosomal protein L13 [Populus trichocarpa]
9 Hb_092337_020 0.1430295543 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
10 Hb_002292_010 0.14466823 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
11 Hb_007123_070 0.1447427341 - - -
12 Hb_000563_330 0.1458044366 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_000169_190 0.1459448089 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
14 Hb_000258_120 0.1464583736 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
15 Hb_001269_200 0.146603922 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
16 Hb_000140_330 0.1466185853 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
17 Hb_009252_100 0.1468658946 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
18 Hb_188996_010 0.1472428157 - - conserved hypothetical protein [Ricinus communis]
19 Hb_063805_010 0.1474079267 - - -
20 Hb_000175_090 0.1475343212 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007083_010 Hb_007083_010 Hb_014720_170 Hb_014720_170 Hb_007083_010--Hb_014720_170 Hb_027472_210 Hb_027472_210 Hb_007083_010--Hb_027472_210 Hb_000504_170 Hb_000504_170 Hb_007083_010--Hb_000504_170 Hb_002043_090 Hb_002043_090 Hb_007083_010--Hb_002043_090 Hb_002026_140 Hb_002026_140 Hb_007083_010--Hb_002026_140 Hb_001427_050 Hb_001427_050 Hb_007083_010--Hb_001427_050 Hb_001135_020 Hb_001135_020 Hb_014720_170--Hb_001135_020 Hb_001828_200 Hb_001828_200 Hb_014720_170--Hb_001828_200 Hb_002292_010 Hb_002292_010 Hb_014720_170--Hb_002292_010 Hb_014720_170--Hb_002026_140 Hb_014720_170--Hb_000504_170 Hb_063805_010 Hb_063805_010 Hb_027472_210--Hb_063805_010 Hb_092337_020 Hb_092337_020 Hb_027472_210--Hb_092337_020 Hb_000563_330 Hb_000563_330 Hb_027472_210--Hb_000563_330 Hb_000169_190 Hb_000169_190 Hb_027472_210--Hb_000169_190 Hb_005291_040 Hb_005291_040 Hb_027472_210--Hb_005291_040 Hb_001922_130 Hb_001922_130 Hb_000504_170--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_000504_170--Hb_000186_260 Hb_009178_020 Hb_009178_020 Hb_000504_170--Hb_009178_020 Hb_121729_020 Hb_121729_020 Hb_000504_170--Hb_121729_020 Hb_007416_200 Hb_007416_200 Hb_000504_170--Hb_007416_200 Hb_003299_030 Hb_003299_030 Hb_002043_090--Hb_003299_030 Hb_011386_040 Hb_011386_040 Hb_002043_090--Hb_011386_040 Hb_000457_050 Hb_000457_050 Hb_002043_090--Hb_000457_050 Hb_000261_250 Hb_000261_250 Hb_002043_090--Hb_000261_250 Hb_002043_090--Hb_000563_330 Hb_002045_150 Hb_002045_150 Hb_002043_090--Hb_002045_150 Hb_000359_330 Hb_000359_330 Hb_002026_140--Hb_000359_330 Hb_002639_150 Hb_002639_150 Hb_002026_140--Hb_002639_150 Hb_002026_140--Hb_002292_010 Hb_002157_260 Hb_002157_260 Hb_002026_140--Hb_002157_260 Hb_002026_140--Hb_000261_250 Hb_003142_070 Hb_003142_070 Hb_002026_140--Hb_003142_070 Hb_001427_050--Hb_002292_010 Hb_003687_230 Hb_003687_230 Hb_001427_050--Hb_003687_230 Hb_007007_050 Hb_007007_050 Hb_001427_050--Hb_007007_050 Hb_001427_050--Hb_002639_150 Hb_003467_010 Hb_003467_010 Hb_001427_050--Hb_003467_010 Hb_000926_180 Hb_000926_180 Hb_001427_050--Hb_000926_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.2873 17.3608 20.4768 6.377 16.6411 12.5195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7678 10.4509 3.14651 5.68658 1.39586

CAGE analysis