Hb_014720_170

Information

Type -
Description -
Location Contig14720: 172716-173185
Sequence    

Annotation

kegg
ID rcu:RCOM_1510350
description glutaredoxin-1, grx1, putative
nr
ID XP_002511377.1
description glutaredoxin-1, grx1, putative [Ricinus communis]
swissprot
ID Q8L8T2
description Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2
trembl
ID B9RB02
description Glutaredoxin-1, grx1, putative OS=Ricinus communis GN=RCOM_1510350 PE=4 SV=1
Gene Ontology
ID GO:0005623
description glutaredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11977: 172580-173545
cDNA
(Sanger)
(ID:Location)		 020_K05.ab1: 173262-173543 , 032_J02.ab1: 172969-173545

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014720_170 0.0 - - glutaredoxin-1, grx1, putative [Ricinus communis]
2 Hb_007083_010 0.0879052469 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
3 Hb_001135_020 0.1194027049 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
4 Hb_001828_200 0.1229303826 - - ribosomal protein L13 [Populus trichocarpa]
5 Hb_002292_010 0.1231118367 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
6 Hb_002026_140 0.127359898 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
7 Hb_000504_170 0.1309159285 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
8 Hb_007007_050 0.1420375603 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
9 Hb_000140_330 0.1457287464 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
10 Hb_000359_330 0.1479968673 - - conserved hypothetical protein [Ricinus communis]
11 Hb_141532_010 0.1495837616 - - PREDICTED: protein SMG9-like [Jatropha curcas]
12 Hb_009252_100 0.150370193 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
13 Hb_000175_090 0.150379912 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000258_320 0.1512439227 - - -
15 Hb_001427_050 0.152473367 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
16 Hb_156144_030 0.1536517289 - - hypothetical protein RCOM_0187400 [Ricinus communis]
17 Hb_007164_020 0.1552861186 - - hypothetical protein glysoja_025872 [Glycine soja]
18 Hb_007778_020 0.156340222 - - -
19 Hb_002043_090 0.1564768421 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
20 Hb_140616_020 0.1573263044 - - -

Gene co-expression network

sample Hb_014720_170 Hb_014720_170 Hb_007083_010 Hb_007083_010 Hb_014720_170--Hb_007083_010 Hb_001135_020 Hb_001135_020 Hb_014720_170--Hb_001135_020 Hb_001828_200 Hb_001828_200 Hb_014720_170--Hb_001828_200 Hb_002292_010 Hb_002292_010 Hb_014720_170--Hb_002292_010 Hb_002026_140 Hb_002026_140 Hb_014720_170--Hb_002026_140 Hb_000504_170 Hb_000504_170 Hb_014720_170--Hb_000504_170 Hb_027472_210 Hb_027472_210 Hb_007083_010--Hb_027472_210 Hb_007083_010--Hb_000504_170 Hb_002043_090 Hb_002043_090 Hb_007083_010--Hb_002043_090 Hb_007083_010--Hb_002026_140 Hb_001427_050 Hb_001427_050 Hb_007083_010--Hb_001427_050 Hb_001135_020--Hb_002292_010 Hb_001288_080 Hb_001288_080 Hb_001135_020--Hb_001288_080 Hb_007007_050 Hb_007007_050 Hb_001135_020--Hb_007007_050 Hb_001135_020--Hb_001828_200 Hb_004324_340 Hb_004324_340 Hb_001135_020--Hb_004324_340 Hb_141532_010 Hb_141532_010 Hb_001135_020--Hb_141532_010 Hb_007164_020 Hb_007164_020 Hb_001828_200--Hb_007164_020 Hb_134951_010 Hb_134951_010 Hb_001828_200--Hb_134951_010 Hb_052764_050 Hb_052764_050 Hb_001828_200--Hb_052764_050 Hb_001828_200--Hb_001288_080 Hb_001828_200--Hb_002292_010 Hb_002292_010--Hb_007007_050 Hb_004363_010 Hb_004363_010 Hb_002292_010--Hb_004363_010 Hb_002292_010--Hb_141532_010 Hb_002639_150 Hb_002639_150 Hb_002292_010--Hb_002639_150 Hb_003687_230 Hb_003687_230 Hb_002292_010--Hb_003687_230 Hb_000359_330 Hb_000359_330 Hb_002026_140--Hb_000359_330 Hb_002026_140--Hb_002639_150 Hb_002026_140--Hb_002292_010 Hb_002157_260 Hb_002157_260 Hb_002026_140--Hb_002157_260 Hb_000261_250 Hb_000261_250 Hb_002026_140--Hb_000261_250 Hb_003142_070 Hb_003142_070 Hb_002026_140--Hb_003142_070 Hb_001922_130 Hb_001922_130 Hb_000504_170--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_000504_170--Hb_000186_260 Hb_009178_020 Hb_009178_020 Hb_000504_170--Hb_009178_020 Hb_121729_020 Hb_121729_020 Hb_000504_170--Hb_121729_020 Hb_007416_200 Hb_007416_200 Hb_000504_170--Hb_007416_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
363.47 179.699 168.867 73.2615 207.853 108.557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.806 136.603 57.2705 32.4607 14.1625

CAGE analysis