Hb_121729_020

Information

Type -
Description -
Location Contig121729: 2607-3226
Sequence    

Annotation

kegg
ID rcu:RCOM_0331180
description DNA binding protein, putative
nr
ID XP_002533545.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5M6
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0331180 PE=4 SV=1
Gene Ontology
ID GO:0000785
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121729_020 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_012184_050 0.1163708178 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
3 Hb_000504_170 0.1267804911 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
4 Hb_003064_030 0.1277066627 - - bromodomain-containing protein, putative [Ricinus communis]
5 Hb_002805_170 0.1277799626 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
6 Hb_005695_060 0.1331567779 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
7 Hb_008246_030 0.1387919013 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
8 Hb_007951_100 0.1409729821 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_035318_010 0.1424641758 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
10 Hb_001474_030 0.1427187196 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
11 Hb_006452_160 0.1435285741 - - structural constituent of ribosome, putative [Ricinus communis]
12 Hb_000787_170 0.1444175984 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
13 Hb_000045_320 0.1470714675 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
14 Hb_000140_330 0.1487106888 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
15 Hb_027472_210 0.1489626396 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
16 Hb_007123_070 0.1491223805 - - -
17 Hb_002276_050 0.1544968858 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
18 Hb_092337_020 0.1579637654 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
19 Hb_002783_120 0.1595168882 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
20 Hb_000107_170 0.1612105271 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_121729_020 Hb_121729_020 Hb_012184_050 Hb_012184_050 Hb_121729_020--Hb_012184_050 Hb_000504_170 Hb_000504_170 Hb_121729_020--Hb_000504_170 Hb_003064_030 Hb_003064_030 Hb_121729_020--Hb_003064_030 Hb_002805_170 Hb_002805_170 Hb_121729_020--Hb_002805_170 Hb_005695_060 Hb_005695_060 Hb_121729_020--Hb_005695_060 Hb_008246_030 Hb_008246_030 Hb_121729_020--Hb_008246_030 Hb_012184_050--Hb_002805_170 Hb_000169_190 Hb_000169_190 Hb_012184_050--Hb_000169_190 Hb_000045_320 Hb_000045_320 Hb_012184_050--Hb_000045_320 Hb_007951_100 Hb_007951_100 Hb_012184_050--Hb_007951_100 Hb_012184_050--Hb_005695_060 Hb_001922_130 Hb_001922_130 Hb_000504_170--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_000504_170--Hb_000186_260 Hb_009178_020 Hb_009178_020 Hb_000504_170--Hb_009178_020 Hb_007083_010 Hb_007083_010 Hb_000504_170--Hb_007083_010 Hb_007416_200 Hb_007416_200 Hb_000504_170--Hb_007416_200 Hb_009620_030 Hb_009620_030 Hb_003064_030--Hb_009620_030 Hb_080147_040 Hb_080147_040 Hb_003064_030--Hb_080147_040 Hb_035318_010 Hb_035318_010 Hb_003064_030--Hb_035318_010 Hb_000787_170 Hb_000787_170 Hb_003064_030--Hb_000787_170 Hb_010128_070 Hb_010128_070 Hb_003064_030--Hb_010128_070 Hb_002805_170--Hb_007951_100 Hb_001703_130 Hb_001703_130 Hb_002805_170--Hb_001703_130 Hb_010883_080 Hb_010883_080 Hb_002805_170--Hb_010883_080 Hb_002805_170--Hb_000045_320 Hb_002612_010 Hb_002612_010 Hb_002805_170--Hb_002612_010 Hb_002783_120 Hb_002783_120 Hb_005695_060--Hb_002783_120 Hb_001001_020 Hb_001001_020 Hb_005695_060--Hb_001001_020 Hb_000976_080 Hb_000976_080 Hb_005695_060--Hb_000976_080 Hb_000453_190 Hb_000453_190 Hb_005695_060--Hb_000453_190 Hb_152453_010 Hb_152453_010 Hb_005695_060--Hb_152453_010 Hb_005846_020 Hb_005846_020 Hb_005695_060--Hb_005846_020 Hb_000363_380 Hb_000363_380 Hb_008246_030--Hb_000363_380 Hb_004920_060 Hb_004920_060 Hb_008246_030--Hb_004920_060 Hb_008246_030--Hb_002612_010 Hb_002301_270 Hb_002301_270 Hb_008246_030--Hb_002301_270 Hb_012404_070 Hb_012404_070 Hb_008246_030--Hb_012404_070 Hb_017895_020 Hb_017895_020 Hb_008246_030--Hb_017895_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.3181 21.3405 20.2622 2.94298 24.8807 29.3061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33292 12.9599 2.83336 3.79155 5.33802

CAGE analysis