Hb_003064_030

Information

Type -
Description -
Location Contig3064: 24929-30203
Sequence    

Annotation

kegg
ID rcu:RCOM_0636080
description bromodomain-containing protein, putative (EC:2.3.1.48)
nr
ID XP_002519772.1
description bromodomain-containing protein, putative [Ricinus communis]
swissprot
ID Q9LS28
description Transcription factor GTE12 OS=Arabidopsis thaliana GN=GTE12 PE=2 SV=2
trembl
ID B9S1A3
description Bromodomain-containing protein, putative OS=Ricinus communis GN=RCOM_0636080 PE=4 SV=1
Gene Ontology
ID GO:0016746
description transcription factor gte12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32384: 27536-27668 , PASA_asmbl_32385: 25148-27668 , PASA_asmbl_32386: 26699-26955 , PASA_asmbl_32387: 27770-28529 , PASA_asmbl_32388: 27770-28529 , PASA_asmbl_32389: 28553-30086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003064_030 0.0 - - bromodomain-containing protein, putative [Ricinus communis]
2 Hb_009620_030 0.1227479774 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
3 Hb_080147_040 0.1249730949 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
4 Hb_035318_010 0.1268282163 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
5 Hb_121729_020 0.1277066627 - - DNA binding protein, putative [Ricinus communis]
6 Hb_000787_170 0.1299646227 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
7 Hb_010128_070 0.1326779233 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_006452_160 0.1356158892 - - structural constituent of ribosome, putative [Ricinus communis]
9 Hb_000742_210 0.1386420151 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_008246_030 0.1416094379 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
11 Hb_000336_270 0.1419274799 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_000120_510 0.1419969328 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
13 Hb_002276_050 0.1425891252 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
14 Hb_000140_330 0.1428428551 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
15 Hb_162286_020 0.1443473262 - - PREDICTED: uncharacterized protein LOC105642702 [Jatropha curcas]
16 Hb_002675_040 0.1443755103 - - ran-binding protein, putative [Ricinus communis]
17 Hb_003106_150 0.1448015838 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
18 Hb_001160_120 0.1455104991 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000406_240 0.1474490481 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
20 Hb_135377_010 0.1478316603 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]

Gene co-expression network

sample Hb_003064_030 Hb_003064_030 Hb_009620_030 Hb_009620_030 Hb_003064_030--Hb_009620_030 Hb_080147_040 Hb_080147_040 Hb_003064_030--Hb_080147_040 Hb_035318_010 Hb_035318_010 Hb_003064_030--Hb_035318_010 Hb_121729_020 Hb_121729_020 Hb_003064_030--Hb_121729_020 Hb_000787_170 Hb_000787_170 Hb_003064_030--Hb_000787_170 Hb_010128_070 Hb_010128_070 Hb_003064_030--Hb_010128_070 Hb_009620_030--Hb_080147_040 Hb_001900_120 Hb_001900_120 Hb_009620_030--Hb_001900_120 Hb_017895_020 Hb_017895_020 Hb_009620_030--Hb_017895_020 Hb_147737_010 Hb_147737_010 Hb_009620_030--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_009620_030--Hb_002675_040 Hb_006588_050 Hb_006588_050 Hb_009620_030--Hb_006588_050 Hb_000300_360 Hb_000300_360 Hb_080147_040--Hb_000300_360 Hb_001953_150 Hb_001953_150 Hb_080147_040--Hb_001953_150 Hb_006452_160 Hb_006452_160 Hb_080147_040--Hb_006452_160 Hb_005188_060 Hb_005188_060 Hb_080147_040--Hb_005188_060 Hb_140049_020 Hb_140049_020 Hb_080147_040--Hb_140049_020 Hb_001910_020 Hb_001910_020 Hb_035318_010--Hb_001910_020 Hb_035318_010--Hb_000787_170 Hb_001882_040 Hb_001882_040 Hb_035318_010--Hb_001882_040 Hb_152453_010 Hb_152453_010 Hb_035318_010--Hb_152453_010 Hb_000392_050 Hb_000392_050 Hb_035318_010--Hb_000392_050 Hb_000939_060 Hb_000939_060 Hb_035318_010--Hb_000939_060 Hb_012184_050 Hb_012184_050 Hb_121729_020--Hb_012184_050 Hb_000504_170 Hb_000504_170 Hb_121729_020--Hb_000504_170 Hb_002805_170 Hb_002805_170 Hb_121729_020--Hb_002805_170 Hb_005695_060 Hb_005695_060 Hb_121729_020--Hb_005695_060 Hb_008246_030 Hb_008246_030 Hb_121729_020--Hb_008246_030 Hb_000787_170--Hb_000939_060 Hb_000394_190 Hb_000394_190 Hb_000787_170--Hb_000394_190 Hb_000261_250 Hb_000261_250 Hb_000787_170--Hb_000261_250 Hb_003467_010 Hb_003467_010 Hb_000787_170--Hb_003467_010 Hb_000140_330 Hb_000140_330 Hb_000787_170--Hb_000140_330 Hb_003106_150 Hb_003106_150 Hb_010128_070--Hb_003106_150 Hb_000281_010 Hb_000281_010 Hb_010128_070--Hb_000281_010 Hb_017075_030 Hb_017075_030 Hb_010128_070--Hb_017075_030 Hb_010128_070--Hb_009620_030 Hb_006615_100 Hb_006615_100 Hb_010128_070--Hb_006615_100 Hb_000116_460 Hb_000116_460 Hb_010128_070--Hb_000116_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.3204 17.4868 15.8398 5.4256 17.8398 24.1701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.25743 8.69415 3.90274 7.43496 8.9387

CAGE analysis