Hb_000045_320

Information

Type -
Description -
Location Contig45: 295911-301375
Sequence    

Annotation

kegg
ID rcu:RCOM_0591290
description hypothetical protein
nr
ID XP_012087908.1
description PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SLI3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0591290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43156: 295987-301414
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_320 0.0 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
2 Hb_002805_170 0.1029559428 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
3 Hb_002997_160 0.106796597 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
4 Hb_000173_150 0.1070503647 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
5 Hb_012184_050 0.1095744053 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
6 Hb_001269_200 0.1119181371 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
7 Hb_001117_190 0.1247829555 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
8 Hb_006452_160 0.1259281145 - - structural constituent of ribosome, putative [Ricinus communis]
9 Hb_008246_030 0.1267614693 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
10 Hb_007951_100 0.1268575891 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_016734_090 0.1275958952 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
12 Hb_003086_190 0.1283794865 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
13 Hb_000165_140 0.1295864979 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
14 Hb_005291_040 0.1305084465 - - PREDICTED: gamma-gliadin [Jatropha curcas]
15 Hb_027472_210 0.1306804788 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
16 Hb_002739_130 0.1326241399 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
17 Hb_058551_010 0.1336982913 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_080147_040 0.1337316505 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
19 Hb_001807_030 0.135196835 - - PREDICTED: CDT1-like protein b [Jatropha curcas]
20 Hb_005054_190 0.1359264536 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000045_320 Hb_000045_320 Hb_002805_170 Hb_002805_170 Hb_000045_320--Hb_002805_170 Hb_002997_160 Hb_002997_160 Hb_000045_320--Hb_002997_160 Hb_000173_150 Hb_000173_150 Hb_000045_320--Hb_000173_150 Hb_012184_050 Hb_012184_050 Hb_000045_320--Hb_012184_050 Hb_001269_200 Hb_001269_200 Hb_000045_320--Hb_001269_200 Hb_001117_190 Hb_001117_190 Hb_000045_320--Hb_001117_190 Hb_002805_170--Hb_012184_050 Hb_007951_100 Hb_007951_100 Hb_002805_170--Hb_007951_100 Hb_001703_130 Hb_001703_130 Hb_002805_170--Hb_001703_130 Hb_010883_080 Hb_010883_080 Hb_002805_170--Hb_010883_080 Hb_002612_010 Hb_002612_010 Hb_002805_170--Hb_002612_010 Hb_001231_030 Hb_001231_030 Hb_002997_160--Hb_001231_030 Hb_000753_100 Hb_000753_100 Hb_002997_160--Hb_000753_100 Hb_002997_160--Hb_001117_190 Hb_011909_060 Hb_011909_060 Hb_002997_160--Hb_011909_060 Hb_080147_040 Hb_080147_040 Hb_002997_160--Hb_080147_040 Hb_003929_140 Hb_003929_140 Hb_002997_160--Hb_003929_140 Hb_000165_140 Hb_000165_140 Hb_000173_150--Hb_000165_140 Hb_058551_010 Hb_058551_010 Hb_000173_150--Hb_058551_010 Hb_000230_430 Hb_000230_430 Hb_000173_150--Hb_000230_430 Hb_000069_590 Hb_000069_590 Hb_000173_150--Hb_000069_590 Hb_002739_130 Hb_002739_130 Hb_000173_150--Hb_002739_130 Hb_000735_050 Hb_000735_050 Hb_000173_150--Hb_000735_050 Hb_000169_190 Hb_000169_190 Hb_012184_050--Hb_000169_190 Hb_121729_020 Hb_121729_020 Hb_012184_050--Hb_121729_020 Hb_012184_050--Hb_007951_100 Hb_005695_060 Hb_005695_060 Hb_012184_050--Hb_005695_060 Hb_016734_090 Hb_016734_090 Hb_001269_200--Hb_016734_090 Hb_000563_330 Hb_000563_330 Hb_001269_200--Hb_000563_330 Hb_011918_050 Hb_011918_050 Hb_001269_200--Hb_011918_050 Hb_039605_010 Hb_039605_010 Hb_001269_200--Hb_039605_010 Hb_001269_200--Hb_002739_130 Hb_006452_160 Hb_006452_160 Hb_001269_200--Hb_006452_160 Hb_003540_160 Hb_003540_160 Hb_001117_190--Hb_003540_160 Hb_007229_040 Hb_007229_040 Hb_001117_190--Hb_007229_040 Hb_000317_150 Hb_000317_150 Hb_001117_190--Hb_000317_150 Hb_001117_190--Hb_000753_100 Hb_005539_190 Hb_005539_190 Hb_001117_190--Hb_005539_190 Hb_005188_060 Hb_005188_060 Hb_001117_190--Hb_005188_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.0041 67.8311 65.5559 14.9078 64.9445 63.4484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.90834 11.2405 17.0651 12.895 14.6597

CAGE analysis