Hb_002043_090

Information

Type -
Description -
Location Contig2043: 125005-126652
Sequence    

Annotation

kegg
ID rcu:RCOM_1485760
description chmp1, putative
nr
ID KDP40812.1
description hypothetical protein JCGZ_24811 [Jatropha curcas]
swissprot
ID Q8LE58
description ESCRT-related protein CHMP1A OS=Arabidopsis thaliana GN=CHMP1A PE=1 SV=1
trembl
ID A0A067KXF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24811 PE=4 SV=1
Gene Ontology
ID GO:0007034
description charged multivesicular body protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20979: 125013-126581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002043_090 0.0 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
2 Hb_003299_030 0.0583814885 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
3 Hb_011386_040 0.0812252643 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
4 Hb_000457_050 0.0882303608 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
5 Hb_000261_250 0.0900997519 - - elongation factor 1-alpha [Lepidium sativum]
6 Hb_000563_330 0.0925340675 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_002045_150 0.0928515699 - - histone acetyltransferase gcn5, putative [Ricinus communis]
8 Hb_000394_190 0.0932514176 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
9 Hb_002326_020 0.093437986 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
10 Hb_008511_030 0.094877334 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
11 Hb_000140_330 0.0965110233 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
12 Hb_003086_190 0.0965372814 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
13 Hb_000787_170 0.096848542 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
14 Hb_006452_160 0.0968764196 - - structural constituent of ribosome, putative [Ricinus communis]
15 Hb_111198_010 0.0972368971 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
16 Hb_033095_020 0.0975497695 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002272_020 0.0985850685 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
18 Hb_032202_110 0.0987876929 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
19 Hb_000939_060 0.0991468783 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
20 Hb_000140_080 0.1020153954 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002043_090 Hb_002043_090 Hb_003299_030 Hb_003299_030 Hb_002043_090--Hb_003299_030 Hb_011386_040 Hb_011386_040 Hb_002043_090--Hb_011386_040 Hb_000457_050 Hb_000457_050 Hb_002043_090--Hb_000457_050 Hb_000261_250 Hb_000261_250 Hb_002043_090--Hb_000261_250 Hb_000563_330 Hb_000563_330 Hb_002043_090--Hb_000563_330 Hb_002045_150 Hb_002045_150 Hb_002043_090--Hb_002045_150 Hb_003299_030--Hb_000457_050 Hb_008511_030 Hb_008511_030 Hb_003299_030--Hb_008511_030 Hb_002272_020 Hb_002272_020 Hb_003299_030--Hb_002272_020 Hb_111198_010 Hb_111198_010 Hb_003299_030--Hb_111198_010 Hb_003086_190 Hb_003086_190 Hb_003299_030--Hb_003086_190 Hb_050847_020 Hb_050847_020 Hb_011386_040--Hb_050847_020 Hb_032202_110 Hb_032202_110 Hb_011386_040--Hb_032202_110 Hb_000771_180 Hb_000771_180 Hb_011386_040--Hb_000771_180 Hb_000140_080 Hb_000140_080 Hb_011386_040--Hb_000140_080 Hb_011386_040--Hb_002045_150 Hb_000136_090 Hb_000136_090 Hb_011386_040--Hb_000136_090 Hb_000261_220 Hb_000261_220 Hb_000457_050--Hb_000261_220 Hb_000457_050--Hb_008511_030 Hb_000283_130 Hb_000283_130 Hb_000457_050--Hb_000283_130 Hb_009771_100 Hb_009771_100 Hb_000457_050--Hb_009771_100 Hb_000152_340 Hb_000152_340 Hb_000457_050--Hb_000152_340 Hb_000394_190 Hb_000394_190 Hb_000261_250--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_000261_250--Hb_002192_080 Hb_001142_050 Hb_001142_050 Hb_000261_250--Hb_001142_050 Hb_000359_330 Hb_000359_330 Hb_000261_250--Hb_000359_330 Hb_003849_060 Hb_003849_060 Hb_000261_250--Hb_003849_060 Hb_106552_050 Hb_106552_050 Hb_000261_250--Hb_106552_050 Hb_006452_160 Hb_006452_160 Hb_000563_330--Hb_006452_160 Hb_002739_130 Hb_002739_130 Hb_000563_330--Hb_002739_130 Hb_003994_140 Hb_003994_140 Hb_000563_330--Hb_003994_140 Hb_039605_010 Hb_039605_010 Hb_000563_330--Hb_039605_010 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_016734_090 Hb_016734_090 Hb_000563_330--Hb_016734_090 Hb_002157_260 Hb_002157_260 Hb_002045_150--Hb_002157_260 Hb_140049_030 Hb_140049_030 Hb_002045_150--Hb_140049_030 Hb_002045_150--Hb_050847_020 Hb_002045_150--Hb_000771_180 Hb_000300_360 Hb_000300_360 Hb_002045_150--Hb_000300_360 Hb_002045_150--Hb_006452_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
260.941 253.351 196.989 100.053 211.551 241.601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.56 144.292 64.4466 89.5675 37.647

CAGE analysis