Hb_003086_190

Information

Type -
Description -
Location Contig3086: 184054-192005
Sequence    

Annotation

kegg
ID rcu:RCOM_0421530
description hypothetical protein
nr
ID XP_012074289.1
description PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08737 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32601: 184118-192001
cDNA
(Sanger)
(ID:Location)		 014_P16.ab1: 184187-191748

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_190 0.0 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
2 Hb_005188_060 0.089002346 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
3 Hb_000116_060 0.0898103744 - - plant ubiquilin, putative [Ricinus communis]
4 Hb_000230_430 0.090881578 - - catalytic, putative [Ricinus communis]
5 Hb_001243_060 0.0918422254 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
6 Hb_003299_030 0.0953328995 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
7 Hb_009780_100 0.0956925298 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
8 Hb_002043_090 0.0965372814 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
9 Hb_007403_050 0.0983971324 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
10 Hb_005883_010 0.0988060176 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003680_230 0.1003531348 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
12 Hb_004631_190 0.1005391701 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
13 Hb_080147_040 0.1011708832 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
14 Hb_014361_150 0.1016067301 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
15 Hb_000457_050 0.1025633787 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
16 Hb_000939_060 0.1045083571 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
17 Hb_031711_010 0.1049725709 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
18 Hb_000173_150 0.105129682 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
19 Hb_009112_010 0.1061527263 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
20 Hb_000034_160 0.1064673478 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]

Gene co-expression network

sample Hb_003086_190 Hb_003086_190 Hb_005188_060 Hb_005188_060 Hb_003086_190--Hb_005188_060 Hb_000116_060 Hb_000116_060 Hb_003086_190--Hb_000116_060 Hb_000230_430 Hb_000230_430 Hb_003086_190--Hb_000230_430 Hb_001243_060 Hb_001243_060 Hb_003086_190--Hb_001243_060 Hb_003299_030 Hb_003299_030 Hb_003086_190--Hb_003299_030 Hb_009780_100 Hb_009780_100 Hb_003086_190--Hb_009780_100 Hb_007943_120 Hb_007943_120 Hb_005188_060--Hb_007943_120 Hb_005883_010 Hb_005883_010 Hb_005188_060--Hb_005883_010 Hb_003680_230 Hb_003680_230 Hb_005188_060--Hb_003680_230 Hb_000140_330 Hb_000140_330 Hb_005188_060--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005188_060--Hb_007229_040 Hb_004635_050 Hb_004635_050 Hb_005188_060--Hb_004635_050 Hb_000116_060--Hb_001243_060 Hb_000116_060--Hb_003680_230 Hb_000162_280 Hb_000162_280 Hb_000116_060--Hb_000162_280 Hb_001377_070 Hb_001377_070 Hb_000116_060--Hb_001377_070 Hb_009112_010 Hb_009112_010 Hb_000116_060--Hb_009112_010 Hb_003040_020 Hb_003040_020 Hb_000116_060--Hb_003040_020 Hb_000230_430--Hb_001243_060 Hb_002902_020 Hb_002902_020 Hb_000230_430--Hb_002902_020 Hb_004631_190 Hb_004631_190 Hb_000230_430--Hb_004631_190 Hb_000264_070 Hb_000264_070 Hb_000230_430--Hb_000264_070 Hb_000230_430--Hb_009780_100 Hb_118840_050 Hb_118840_050 Hb_000230_430--Hb_118840_050 Hb_001243_060--Hb_009780_100 Hb_000331_330 Hb_000331_330 Hb_001243_060--Hb_000331_330 Hb_003858_090 Hb_003858_090 Hb_001243_060--Hb_003858_090 Hb_001141_370 Hb_001141_370 Hb_001243_060--Hb_001141_370 Hb_002043_090 Hb_002043_090 Hb_003299_030--Hb_002043_090 Hb_000457_050 Hb_000457_050 Hb_003299_030--Hb_000457_050 Hb_008511_030 Hb_008511_030 Hb_003299_030--Hb_008511_030 Hb_002272_020 Hb_002272_020 Hb_003299_030--Hb_002272_020 Hb_111198_010 Hb_111198_010 Hb_003299_030--Hb_111198_010 Hb_009771_100 Hb_009771_100 Hb_009780_100--Hb_009771_100 Hb_003633_070 Hb_003633_070 Hb_009780_100--Hb_003633_070 Hb_006615_120 Hb_006615_120 Hb_009780_100--Hb_006615_120 Hb_003117_020 Hb_003117_020 Hb_009780_100--Hb_003117_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
135.224 150.562 117.911 69.6304 130.372 147.869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.6896 49.8204 65.2691 41.4613 29.7478

CAGE analysis