Hb_005291_040

Information

Type -
Description -
Location Contig5291: 43290-44841
Sequence    

Annotation

kegg
ID mdm:103446781
description uncharacterized LOC103446781
nr
ID XP_012085025.1
description PREDICTED: gamma-gliadin [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JST7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22249 PE=4 SV=1
Gene Ontology
ID GO:0003677
description brg-1 associated

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005291_040 0.0 - - PREDICTED: gamma-gliadin [Jatropha curcas]
2 Hb_010738_010 0.1063941663 - - PREDICTED: B2 protein [Jatropha curcas]
3 Hb_002997_160 0.1076671883 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
4 Hb_005883_010 0.1085534697 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000283_130 0.1102860689 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
6 Hb_007229_040 0.1110300136 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
7 Hb_001117_190 0.1139875933 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
8 Hb_011909_060 0.1189092739 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
9 Hb_006346_040 0.1196826271 - - hypothetical protein JCGZ_20335 [Jatropha curcas]
10 Hb_007403_050 0.1201283569 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
11 Hb_000034_160 0.1229214837 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
12 Hb_027472_210 0.1269316801 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
13 Hb_080147_040 0.1272040168 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
14 Hb_017075_030 0.1279735879 - - helicase, putative [Ricinus communis]
15 Hb_005188_060 0.1295938025 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
16 Hb_032202_110 0.1302826363 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
17 Hb_000753_100 0.1302863468 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
18 Hb_000045_320 0.1305084465 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
19 Hb_000140_330 0.1332685058 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
20 Hb_000363_280 0.1337568742 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]

Gene co-expression network

sample Hb_005291_040 Hb_005291_040 Hb_010738_010 Hb_010738_010 Hb_005291_040--Hb_010738_010 Hb_002997_160 Hb_002997_160 Hb_005291_040--Hb_002997_160 Hb_005883_010 Hb_005883_010 Hb_005291_040--Hb_005883_010 Hb_000283_130 Hb_000283_130 Hb_005291_040--Hb_000283_130 Hb_007229_040 Hb_007229_040 Hb_005291_040--Hb_007229_040 Hb_001117_190 Hb_001117_190 Hb_005291_040--Hb_001117_190 Hb_032202_110 Hb_032202_110 Hb_010738_010--Hb_032202_110 Hb_000169_130 Hb_000169_130 Hb_010738_010--Hb_000169_130 Hb_010738_010--Hb_005883_010 Hb_111198_010 Hb_111198_010 Hb_010738_010--Hb_111198_010 Hb_000103_100 Hb_000103_100 Hb_010738_010--Hb_000103_100 Hb_010738_010--Hb_000283_130 Hb_001231_030 Hb_001231_030 Hb_002997_160--Hb_001231_030 Hb_000753_100 Hb_000753_100 Hb_002997_160--Hb_000753_100 Hb_002997_160--Hb_001117_190 Hb_011909_060 Hb_011909_060 Hb_002997_160--Hb_011909_060 Hb_080147_040 Hb_080147_040 Hb_002997_160--Hb_080147_040 Hb_003929_140 Hb_003929_140 Hb_002997_160--Hb_003929_140 Hb_007943_120 Hb_007943_120 Hb_005883_010--Hb_007943_120 Hb_005188_060 Hb_005188_060 Hb_005883_010--Hb_005188_060 Hb_005883_010--Hb_000283_130 Hb_000140_330 Hb_000140_330 Hb_005883_010--Hb_000140_330 Hb_005883_010--Hb_007229_040 Hb_000406_240 Hb_000406_240 Hb_000283_130--Hb_000406_240 Hb_017075_030 Hb_017075_030 Hb_000283_130--Hb_017075_030 Hb_000457_050 Hb_000457_050 Hb_000283_130--Hb_000457_050 Hb_004635_050 Hb_004635_050 Hb_000283_130--Hb_004635_050 Hb_140049_020 Hb_140049_020 Hb_007229_040--Hb_140049_020 Hb_007229_040--Hb_001117_190 Hb_000320_380 Hb_000320_380 Hb_007229_040--Hb_000320_380 Hb_007229_040--Hb_005188_060 Hb_007229_040--Hb_007943_120 Hb_003540_160 Hb_003540_160 Hb_001117_190--Hb_003540_160 Hb_000317_150 Hb_000317_150 Hb_001117_190--Hb_000317_150 Hb_001117_190--Hb_000753_100 Hb_005539_190 Hb_005539_190 Hb_001117_190--Hb_005539_190 Hb_001117_190--Hb_005188_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.397 13.9837 8.57304 1.21378 7.64748 10.1108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.74942 2.73147 4.18802 3.55344 2.10808

CAGE analysis