Hb_002947_040

Information

Type -
Description -
Location Contig2947: 61994-69154
Sequence    

Annotation

kegg
ID rcu:RCOM_0623850
description hypothetical protein
nr
ID XP_011033392.1
description PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067L3P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04047 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30838: 61722-68571 , PASA_asmbl_30839: 63604-63852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002947_040 0.0 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
2 Hb_002157_260 0.1041111887 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
3 Hb_001040_040 0.1041955115 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
4 Hb_007951_100 0.1058851065 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_000563_330 0.1081201097 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_005188_060 0.1084931189 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
7 Hb_009252_100 0.1092662669 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
8 Hb_058551_010 0.1098484968 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_002026_140 0.1105342839 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
10 Hb_006452_160 0.1151520828 - - structural constituent of ribosome, putative [Ricinus communis]
11 Hb_002739_130 0.1157524045 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
12 Hb_003994_140 0.1159175895 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000173_150 0.1166361862 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
14 Hb_011915_010 0.1178947984 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
15 Hb_002783_120 0.1204465286 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
16 Hb_000453_190 0.1215998253 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
17 Hb_001952_120 0.1217074999 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
18 Hb_002928_010 0.1219334524 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
19 Hb_006658_040 0.1228308852 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
20 Hb_007943_120 0.1245998389 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_002947_040 Hb_002947_040 Hb_002157_260 Hb_002157_260 Hb_002947_040--Hb_002157_260 Hb_001040_040 Hb_001040_040 Hb_002947_040--Hb_001040_040 Hb_007951_100 Hb_007951_100 Hb_002947_040--Hb_007951_100 Hb_000563_330 Hb_000563_330 Hb_002947_040--Hb_000563_330 Hb_005188_060 Hb_005188_060 Hb_002947_040--Hb_005188_060 Hb_009252_100 Hb_009252_100 Hb_002947_040--Hb_009252_100 Hb_005965_030 Hb_005965_030 Hb_002157_260--Hb_005965_030 Hb_002045_150 Hb_002045_150 Hb_002157_260--Hb_002045_150 Hb_000160_350 Hb_000160_350 Hb_002157_260--Hb_000160_350 Hb_006452_160 Hb_006452_160 Hb_002157_260--Hb_006452_160 Hb_006960_050 Hb_006960_050 Hb_002157_260--Hb_006960_050 Hb_001408_100 Hb_001408_100 Hb_002157_260--Hb_001408_100 Hb_000395_020 Hb_000395_020 Hb_001040_040--Hb_000395_020 Hb_011915_010 Hb_011915_010 Hb_001040_040--Hb_011915_010 Hb_000868_060 Hb_000868_060 Hb_001040_040--Hb_000868_060 Hb_000923_040 Hb_000923_040 Hb_001040_040--Hb_000923_040 Hb_001040_040--Hb_009252_100 Hb_030827_030 Hb_030827_030 Hb_001040_040--Hb_030827_030 Hb_007951_100--Hb_006452_160 Hb_000140_330 Hb_000140_330 Hb_007951_100--Hb_000140_330 Hb_002805_170 Hb_002805_170 Hb_007951_100--Hb_002805_170 Hb_002301_270 Hb_002301_270 Hb_007951_100--Hb_002301_270 Hb_156144_030 Hb_156144_030 Hb_007951_100--Hb_156144_030 Hb_007943_120 Hb_007943_120 Hb_007951_100--Hb_007943_120 Hb_000563_330--Hb_006452_160 Hb_002739_130 Hb_002739_130 Hb_000563_330--Hb_002739_130 Hb_003994_140 Hb_003994_140 Hb_000563_330--Hb_003994_140 Hb_039605_010 Hb_039605_010 Hb_000563_330--Hb_039605_010 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_016734_090 Hb_016734_090 Hb_000563_330--Hb_016734_090 Hb_005188_060--Hb_007943_120 Hb_005883_010 Hb_005883_010 Hb_005188_060--Hb_005883_010 Hb_003680_230 Hb_003680_230 Hb_005188_060--Hb_003680_230 Hb_005188_060--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005188_060--Hb_007229_040 Hb_004635_050 Hb_004635_050 Hb_005188_060--Hb_004635_050 Hb_001083_050 Hb_001083_050 Hb_009252_100--Hb_001083_050 Hb_106552_050 Hb_106552_050 Hb_009252_100--Hb_106552_050 Hb_000477_030 Hb_000477_030 Hb_009252_100--Hb_000477_030 Hb_002326_020 Hb_002326_020 Hb_009252_100--Hb_002326_020 Hb_001357_380 Hb_001357_380 Hb_009252_100--Hb_001357_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1668 25.8825 40.0071 10.0742 47.8515 21.2336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.509 10.7195 12.5268 10.4537 7.97988

CAGE analysis