Hb_156144_030

Information

Type -
Description -
Location Contig156144: 43564-46644
Sequence    

Annotation

kegg
ID rcu:RCOM_0187400
description hypothetical protein
nr
ID XP_002528892.1
description hypothetical protein RCOM_0187400 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0187400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13562: 46598-46976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156144_030 0.0 - - hypothetical protein RCOM_0187400 [Ricinus communis]
2 Hb_007951_100 0.0957391798 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_000953_030 0.1019707044 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
4 Hb_001946_240 0.1146244418 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
5 Hb_000920_280 0.115495815 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
6 Hb_000359_330 0.1210721678 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001473_080 0.121678004 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
8 Hb_000107_170 0.1228030493 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
9 Hb_002026_140 0.1240940583 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
10 Hb_002947_040 0.1246661693 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
11 Hb_009178_020 0.1250079744 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
12 Hb_000211_110 0.1295569764 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
13 Hb_009252_100 0.1299787898 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
14 Hb_002326_020 0.13191392 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
15 Hb_000120_570 0.1325308769 - - Mlo protein [Hevea brasiliensis]
16 Hb_001894_030 0.1333244344 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
17 Hb_001754_240 0.133754702 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
18 Hb_001922_130 0.1338240378 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
19 Hb_003142_070 0.1340960492 - - hypothetical protein F383_14657 [Gossypium arboreum]
20 Hb_025669_020 0.1341649121 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_156144_030 Hb_156144_030 Hb_007951_100 Hb_007951_100 Hb_156144_030--Hb_007951_100 Hb_000953_030 Hb_000953_030 Hb_156144_030--Hb_000953_030 Hb_001946_240 Hb_001946_240 Hb_156144_030--Hb_001946_240 Hb_000920_280 Hb_000920_280 Hb_156144_030--Hb_000920_280 Hb_000359_330 Hb_000359_330 Hb_156144_030--Hb_000359_330 Hb_001473_080 Hb_001473_080 Hb_156144_030--Hb_001473_080 Hb_006452_160 Hb_006452_160 Hb_007951_100--Hb_006452_160 Hb_000140_330 Hb_000140_330 Hb_007951_100--Hb_000140_330 Hb_002805_170 Hb_002805_170 Hb_007951_100--Hb_002805_170 Hb_002301_270 Hb_002301_270 Hb_007951_100--Hb_002301_270 Hb_007943_120 Hb_007943_120 Hb_007951_100--Hb_007943_120 Hb_000152_340 Hb_000152_340 Hb_000953_030--Hb_000152_340 Hb_001946_300 Hb_001946_300 Hb_000953_030--Hb_001946_300 Hb_005539_190 Hb_005539_190 Hb_000953_030--Hb_005539_190 Hb_004635_050 Hb_004635_050 Hb_000953_030--Hb_004635_050 Hb_102129_070 Hb_102129_070 Hb_000953_030--Hb_102129_070 Hb_002326_020 Hb_002326_020 Hb_000953_030--Hb_002326_020 Hb_000116_460 Hb_000116_460 Hb_001946_240--Hb_000116_460 Hb_000504_160 Hb_000504_160 Hb_001946_240--Hb_000504_160 Hb_003540_160 Hb_003540_160 Hb_001946_240--Hb_003540_160 Hb_001946_240--Hb_001473_080 Hb_002675_040 Hb_002675_040 Hb_001946_240--Hb_002675_040 Hb_001946_240--Hb_000953_030 Hb_006623_020 Hb_006623_020 Hb_000920_280--Hb_006623_020 Hb_003091_010 Hb_003091_010 Hb_000920_280--Hb_003091_010 Hb_000211_110 Hb_000211_110 Hb_000920_280--Hb_000211_110 Hb_000923_040 Hb_000923_040 Hb_000920_280--Hb_000923_040 Hb_003142_070 Hb_003142_070 Hb_000920_280--Hb_003142_070 Hb_010968_010 Hb_010968_010 Hb_000920_280--Hb_010968_010 Hb_011848_010 Hb_011848_010 Hb_000359_330--Hb_011848_010 Hb_000359_330--Hb_003091_010 Hb_000808_250 Hb_000808_250 Hb_000359_330--Hb_000808_250 Hb_000394_190 Hb_000394_190 Hb_000359_330--Hb_000394_190 Hb_000359_330--Hb_006623_020 Hb_004450_060 Hb_004450_060 Hb_000359_330--Hb_004450_060 Hb_001922_130 Hb_001922_130 Hb_001473_080--Hb_001922_130 Hb_003125_060 Hb_003125_060 Hb_001473_080--Hb_003125_060 Hb_000120_570 Hb_000120_570 Hb_001473_080--Hb_000120_570 Hb_010883_080 Hb_010883_080 Hb_001473_080--Hb_010883_080 Hb_001473_080--Hb_002675_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.79549 2.32193 1.80389 0.937004 4.47393 1.78839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10892 1.16324 0.637723 0.5126 0.304345

CAGE analysis