Hb_000429_250

Information

Type -
Description -
Location Contig429: 326890-327090
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05380g
description POPTRDRAFT_576333; hypothetical protein
nr
ID XP_010087311.1
description hypothetical protein L484_000744 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9QPR0
description Uncharacterized protein OS=Morus notabilis GN=L484_000744 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ring fyve phd zinc finger superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42129: 326697-327177
cDNA
(Sanger)
(ID:Location)		 035_H12.ab1: 326697-327177

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_250 0.0 - - hypothetical protein L484_000744 [Morus notabilis]
2 Hb_001623_300 0.0891733521 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
3 Hb_001623_290 0.0955048864 - - unknown [Populus trichocarpa]
4 Hb_112047_010 0.1214445439 - - -
5 Hb_142751_010 0.1323648115 - - conserved hypothetical protein [Ricinus communis]
6 Hb_128998_010 0.1352640795 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
7 Hb_001767_120 0.1466624179 - - -
8 Hb_000327_290 0.1522443375 - - Histone H4 [Triticum urartu]
9 Hb_007765_010 0.1586277333 - - conserved hypothetical protein [Ricinus communis]
10 Hb_106411_010 0.1597674282 - - Ribosomal protein S25 family protein [Theobroma cacao]
11 Hb_010964_020 0.1653468607 - - RNA helicase [Arabidopsis thaliana]
12 Hb_070469_010 0.1662112879 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
13 Hb_002687_080 0.1710843682 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
14 Hb_015354_010 0.1731492888 - - PREDICTED: B2 protein [Jatropha curcas]
15 Hb_003925_070 0.1777941789 - - ATOZI1, putative [Ricinus communis]
16 Hb_010565_010 0.179469347 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
17 Hb_006663_090 0.1809038684 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
18 Hb_178620_010 0.181551342 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
19 Hb_140291_010 0.18168019 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
20 Hb_005714_130 0.1828439738 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_000429_250 Hb_000429_250 Hb_001623_300 Hb_001623_300 Hb_000429_250--Hb_001623_300 Hb_001623_290 Hb_001623_290 Hb_000429_250--Hb_001623_290 Hb_112047_010 Hb_112047_010 Hb_000429_250--Hb_112047_010 Hb_142751_010 Hb_142751_010 Hb_000429_250--Hb_142751_010 Hb_128998_010 Hb_128998_010 Hb_000429_250--Hb_128998_010 Hb_001767_120 Hb_001767_120 Hb_000429_250--Hb_001767_120 Hb_001623_300--Hb_001623_290 Hb_006663_090 Hb_006663_090 Hb_001623_300--Hb_006663_090 Hb_010964_020 Hb_010964_020 Hb_001623_300--Hb_010964_020 Hb_106415_010 Hb_106415_010 Hb_001623_300--Hb_106415_010 Hb_001623_300--Hb_142751_010 Hb_001623_290--Hb_112047_010 Hb_001623_290--Hb_010964_020 Hb_001623_290--Hb_006663_090 Hb_002687_080 Hb_002687_080 Hb_001623_290--Hb_002687_080 Hb_112047_010--Hb_128998_010 Hb_112047_010--Hb_001623_300 Hb_000327_290 Hb_000327_290 Hb_112047_010--Hb_000327_290 Hb_000136_180 Hb_000136_180 Hb_112047_010--Hb_000136_180 Hb_015354_010 Hb_015354_010 Hb_142751_010--Hb_015354_010 Hb_142751_010--Hb_001767_120 Hb_088428_010 Hb_088428_010 Hb_142751_010--Hb_088428_010 Hb_142751_010--Hb_001623_290 Hb_010504_030 Hb_010504_030 Hb_128998_010--Hb_010504_030 Hb_128998_010--Hb_006663_090 Hb_000007_460 Hb_000007_460 Hb_128998_010--Hb_000007_460 Hb_128998_010--Hb_001767_120 Hb_005714_130 Hb_005714_130 Hb_001767_120--Hb_005714_130 Hb_001752_040 Hb_001752_040 Hb_001767_120--Hb_001752_040 Hb_002508_010 Hb_002508_010 Hb_001767_120--Hb_002508_010 Hb_121467_010 Hb_121467_010 Hb_001767_120--Hb_121467_010 Hb_171788_010 Hb_171788_010 Hb_001767_120--Hb_171788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
278.327 142.25 226.467 444.99 159.685 963.727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
155.958 177.206 86.7777 42.8856 29.7398

CAGE analysis