Hb_000007_460

Information

Type -
Description -
Location Contig7: 434403-435990
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14240g
description POPTRDRAFT_658969; zinc finger family protein
nr
ID XP_012081996.1
description PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HWP4
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s14240g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_460 0.0 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
2 Hb_010504_030 0.131609741 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
3 Hb_128998_010 0.1367569496 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
4 Hb_007188_020 0.1410753014 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
5 Hb_003581_010 0.1417027082 - - hypothetical protein VITISV_004687 [Vitis vinifera]
6 Hb_013691_030 0.1465654419 - - hypothetical protein CISIN_1g020131mg [Citrus sinensis]
7 Hb_000015_070 0.1509050744 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
8 Hb_001427_060 0.1589863143 - - -
9 Hb_005085_030 0.1631018974 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
10 Hb_012052_010 0.1632642873 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
11 Hb_152554_010 0.1655182401 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
12 Hb_005367_010 0.165692339 - - -
13 Hb_000001_040 0.1673859677 - - unnamed protein product [Coffea canephora]
14 Hb_166480_010 0.1674418412 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
15 Hb_007545_050 0.1681098277 - - -
16 Hb_136731_010 0.1740845904 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
17 Hb_032927_010 0.1750589063 - - -
18 Hb_116632_010 0.1763311965 - - unnamed protein product [Vitis vinifera]
19 Hb_006663_090 0.1766335079 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
20 Hb_076875_020 0.17740331 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]

Gene co-expression network

sample Hb_000007_460 Hb_000007_460 Hb_010504_030 Hb_010504_030 Hb_000007_460--Hb_010504_030 Hb_128998_010 Hb_128998_010 Hb_000007_460--Hb_128998_010 Hb_007188_020 Hb_007188_020 Hb_000007_460--Hb_007188_020 Hb_003581_010 Hb_003581_010 Hb_000007_460--Hb_003581_010 Hb_013691_030 Hb_013691_030 Hb_000007_460--Hb_013691_030 Hb_000015_070 Hb_000015_070 Hb_000007_460--Hb_000015_070 Hb_010504_030--Hb_128998_010 Hb_000176_120 Hb_000176_120 Hb_010504_030--Hb_000176_120 Hb_000327_290 Hb_000327_290 Hb_010504_030--Hb_000327_290 Hb_000001_040 Hb_000001_040 Hb_010504_030--Hb_000001_040 Hb_000265_130 Hb_000265_130 Hb_010504_030--Hb_000265_130 Hb_112047_010 Hb_112047_010 Hb_128998_010--Hb_112047_010 Hb_006663_090 Hb_006663_090 Hb_128998_010--Hb_006663_090 Hb_000429_250 Hb_000429_250 Hb_128998_010--Hb_000429_250 Hb_001767_120 Hb_001767_120 Hb_128998_010--Hb_001767_120 Hb_152554_010 Hb_152554_010 Hb_007188_020--Hb_152554_010 Hb_116632_010 Hb_116632_010 Hb_007188_020--Hb_116632_010 Hb_032927_010 Hb_032927_010 Hb_007188_020--Hb_032927_010 Hb_007188_020--Hb_000001_040 Hb_000812_040 Hb_000812_040 Hb_007188_020--Hb_000812_040 Hb_005085_030 Hb_005085_030 Hb_007188_020--Hb_005085_030 Hb_003581_010--Hb_000001_040 Hb_168737_010 Hb_168737_010 Hb_003581_010--Hb_168737_010 Hb_003581_010--Hb_000265_130 Hb_003581_010--Hb_128998_010 Hb_003581_010--Hb_116632_010 Hb_013691_030--Hb_010504_030 Hb_013691_030--Hb_003581_010 Hb_013691_030--Hb_007188_020 Hb_013691_030--Hb_128998_010 Hb_013691_030--Hb_116632_010 Hb_001396_250 Hb_001396_250 Hb_000015_070--Hb_001396_250 Hb_003371_170 Hb_003371_170 Hb_000015_070--Hb_003371_170 Hb_108227_010 Hb_108227_010 Hb_000015_070--Hb_108227_010 Hb_166480_010 Hb_166480_010 Hb_000015_070--Hb_166480_010 Hb_011214_100 Hb_011214_100 Hb_000015_070--Hb_011214_100 Hb_012675_080 Hb_012675_080 Hb_000015_070--Hb_012675_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.20529 0.47703 0.280801 1.71207 0.589345 4.12157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.966874 1.64549 0.209251 0.53247 0.230433

CAGE analysis