Hb_010504_030

Information

Type -
Description -
Location Contig10504: 54527-54867
Sequence    

Annotation

kegg
ID dosa:Os07t0687200-01
description Os07g0687200, CALMODULIN_B, CALB; Similar to Auxin-regulated calmodulin.
nr
ID AAB31257.1
description calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
swissprot
ID -
description -
trembl
ID Q9S989
description Calmodulin homolog (Fragment) OS=Brassica napus PE=4 SV=1
Gene Ontology
ID GO:0005829
description calmodulin 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01716: 50153-54938
cDNA
(Sanger)
(ID:Location)		 001_G22.ab1: 50471-54824 , 011_M18.ab1: 50473-54938 , 013_I23.ab1: 50394-54820 , 015_O14.ab1: 50739-54860 , 023_J09.ab1: 50412-54810 , 024_A07.ab1: 50511-54938 , 030_G15.ab1: 50367-54826 , 030_P01.ab1: 50326-54859 , 031_D11.ab1: 50384-54867 , 031_K19.ab1: 50371-54861

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010504_030 0.0 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
2 Hb_128998_010 0.1211956585 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
3 Hb_000176_120 0.125479071 - - seryl-tRNA synthetase, putative [Ricinus communis]
4 Hb_000327_290 0.1280355121 - - Histone H4 [Triticum urartu]
5 Hb_000001_040 0.1302706613 - - unnamed protein product [Coffea canephora]
6 Hb_000265_130 0.1311998584 - - -
7 Hb_000007_460 0.131609741 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
8 Hb_000261_360 0.1332186043 - - unknown [Lotus japonicus]
9 Hb_007545_050 0.1340422924 - - -
10 Hb_166480_010 0.1371730908 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
11 Hb_007188_020 0.1399197909 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
12 Hb_005367_010 0.1420419196 - - -
13 Hb_152554_010 0.1438398502 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
14 Hb_006487_060 0.1443502848 - - Defective in cullin neddylation protein, putative [Ricinus communis]
15 Hb_000015_070 0.1466489826 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
16 Hb_013691_030 0.1477068806 - - hypothetical protein CISIN_1g020131mg [Citrus sinensis]
17 Hb_136731_010 0.1518999799 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
18 Hb_003581_010 0.155725401 - - hypothetical protein VITISV_004687 [Vitis vinifera]
19 Hb_002687_080 0.1626307011 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
20 Hb_005054_070 0.1628634007 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_010504_030 Hb_010504_030 Hb_128998_010 Hb_128998_010 Hb_010504_030--Hb_128998_010 Hb_000176_120 Hb_000176_120 Hb_010504_030--Hb_000176_120 Hb_000327_290 Hb_000327_290 Hb_010504_030--Hb_000327_290 Hb_000001_040 Hb_000001_040 Hb_010504_030--Hb_000001_040 Hb_000265_130 Hb_000265_130 Hb_010504_030--Hb_000265_130 Hb_000007_460 Hb_000007_460 Hb_010504_030--Hb_000007_460 Hb_112047_010 Hb_112047_010 Hb_128998_010--Hb_112047_010 Hb_006663_090 Hb_006663_090 Hb_128998_010--Hb_006663_090 Hb_000429_250 Hb_000429_250 Hb_128998_010--Hb_000429_250 Hb_128998_010--Hb_000007_460 Hb_001767_120 Hb_001767_120 Hb_128998_010--Hb_001767_120 Hb_005054_070 Hb_005054_070 Hb_000176_120--Hb_005054_070 Hb_006487_060 Hb_006487_060 Hb_000176_120--Hb_006487_060 Hb_152554_010 Hb_152554_010 Hb_000176_120--Hb_152554_010 Hb_000176_120--Hb_000001_040 Hb_136731_010 Hb_136731_010 Hb_000176_120--Hb_136731_010 Hb_002687_080 Hb_002687_080 Hb_000327_290--Hb_002687_080 Hb_007123_060 Hb_007123_060 Hb_000327_290--Hb_007123_060 Hb_082407_010 Hb_082407_010 Hb_000327_290--Hb_082407_010 Hb_000327_290--Hb_112047_010 Hb_000327_290--Hb_136731_010 Hb_000001_040--Hb_000265_130 Hb_106005_010 Hb_106005_010 Hb_000001_040--Hb_106005_010 Hb_007188_020 Hb_007188_020 Hb_000001_040--Hb_007188_020 Hb_004117_180 Hb_004117_180 Hb_000001_040--Hb_004117_180 Hb_003581_010 Hb_003581_010 Hb_000001_040--Hb_003581_010 Hb_000261_360 Hb_000261_360 Hb_000265_130--Hb_000261_360 Hb_000265_130--Hb_003581_010 Hb_000265_130--Hb_000176_120 Hb_000265_130--Hb_007188_020 Hb_000007_460--Hb_007188_020 Hb_000007_460--Hb_003581_010 Hb_013691_030 Hb_013691_030 Hb_000007_460--Hb_013691_030 Hb_000015_070 Hb_000015_070 Hb_000007_460--Hb_000015_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.0802 58.565 59.6987 337.473 117.551 708.592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
222.951 218.051 53.1151 47.5649 6.336

CAGE analysis