Hb_082407_010

Information

Type -
Description -
Location Contig82407: 1-428
Sequence    

Annotation

kegg
ID rcu:RCOM_0143720
description protein farnesyltransferase alpha subunit, putative (EC:2.5.1.59)
nr
ID XP_002534116.1
description protein farnesyltransferase alpha subunit, putative [Ricinus communis]
swissprot
ID Q9LX33
description Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=2
trembl
ID B9T797
description Protein farnesyltransferase alpha subunit, putative OS=Ricinus communis GN=RCOM_0143720 PE=4 SV=1
Gene Ontology
ID GO:1990234
description protein farnesyltransferase geranylgeranyltransferase type-1 subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082407_010 0.0 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
2 Hb_000268_010 0.1149341093 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000327_290 0.1447083503 - - Histone H4 [Triticum urartu]
4 Hb_013492_010 0.1458023549 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
5 Hb_003405_060 0.149236294 - - -
6 Hb_182964_010 0.1536821761 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
7 Hb_007123_060 0.1540134042 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
8 Hb_007545_050 0.1575404739 - - -
9 Hb_001357_100 0.1605240025 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
10 Hb_014834_140 0.1659337312 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
11 Hb_000584_020 0.1694516233 - - hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
12 Hb_004807_060 0.1703497423 - - -
13 Hb_014783_010 0.1704211467 - - cold-inducible RNA binding protein, putative [Ricinus communis]
14 Hb_007333_010 0.1718472911 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000243_040 0.1750118941 - - -
16 Hb_086703_010 0.1762878157 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
17 Hb_000167_060 0.1785630641 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Jatropha curcas]
18 Hb_016604_030 0.1793785539 - - histone H4 [Zea mays]
19 Hb_000010_210 0.1815906183 - - PREDICTED: centromere protein X [Jatropha curcas]
20 Hb_000994_110 0.1827803904 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_082407_010 Hb_082407_010 Hb_000268_010 Hb_000268_010 Hb_082407_010--Hb_000268_010 Hb_000327_290 Hb_000327_290 Hb_082407_010--Hb_000327_290 Hb_013492_010 Hb_013492_010 Hb_082407_010--Hb_013492_010 Hb_003405_060 Hb_003405_060 Hb_082407_010--Hb_003405_060 Hb_182964_010 Hb_182964_010 Hb_082407_010--Hb_182964_010 Hb_007123_060 Hb_007123_060 Hb_082407_010--Hb_007123_060 Hb_014783_010 Hb_014783_010 Hb_000268_010--Hb_014783_010 Hb_003943_130 Hb_003943_130 Hb_000268_010--Hb_003943_130 Hb_004807_060 Hb_004807_060 Hb_000268_010--Hb_004807_060 Hb_002742_050 Hb_002742_050 Hb_000268_010--Hb_002742_050 Hb_002289_120 Hb_002289_120 Hb_000268_010--Hb_002289_120 Hb_010504_030 Hb_010504_030 Hb_000327_290--Hb_010504_030 Hb_002687_080 Hb_002687_080 Hb_000327_290--Hb_002687_080 Hb_000327_290--Hb_007123_060 Hb_112047_010 Hb_112047_010 Hb_000327_290--Hb_112047_010 Hb_136731_010 Hb_136731_010 Hb_000327_290--Hb_136731_010 Hb_163599_010 Hb_163599_010 Hb_013492_010--Hb_163599_010 Hb_013492_010--Hb_003405_060 Hb_001405_130 Hb_001405_130 Hb_013492_010--Hb_001405_130 Hb_008442_010 Hb_008442_010 Hb_013492_010--Hb_008442_010 Hb_014834_140 Hb_014834_140 Hb_013492_010--Hb_014834_140 Hb_003405_060--Hb_014834_140 Hb_086703_010 Hb_086703_010 Hb_003405_060--Hb_086703_010 Hb_004502_020 Hb_004502_020 Hb_003405_060--Hb_004502_020 Hb_000155_180 Hb_000155_180 Hb_003405_060--Hb_000155_180 Hb_029888_020 Hb_029888_020 Hb_003405_060--Hb_029888_020 Hb_003405_060--Hb_004807_060 Hb_006995_040 Hb_006995_040 Hb_182964_010--Hb_006995_040 Hb_016604_030 Hb_016604_030 Hb_182964_010--Hb_016604_030 Hb_001220_010 Hb_001220_010 Hb_182964_010--Hb_001220_010 Hb_007545_050 Hb_007545_050 Hb_182964_010--Hb_007545_050 Hb_000994_110 Hb_000994_110 Hb_182964_010--Hb_000994_110 Hb_001754_070 Hb_001754_070 Hb_182964_010--Hb_001754_070 Hb_004883_050 Hb_004883_050 Hb_007123_060--Hb_004883_050 Hb_012760_130 Hb_012760_130 Hb_007123_060--Hb_012760_130 Hb_001545_050 Hb_001545_050 Hb_007123_060--Hb_001545_050 Hb_184570_010 Hb_184570_010 Hb_007123_060--Hb_184570_010 Hb_012120_030 Hb_012120_030 Hb_007123_060--Hb_012120_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.75677 1.75947 2.38268 5.67714 1.54293 8.5616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.0141 9.05789 0.605893 0.433837 0.331512

CAGE analysis