Hb_163599_010

Information

Type -
Description -
Location Contig163599: 841-1017
Sequence    

Annotation

kegg
ID rcu:RCOM_1579620
description hypothetical protein
nr
ID XP_002513555.1
description hypothetical protein RCOM_1579620 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RII6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1579620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163599_010 0.0 - - hypothetical protein RCOM_1579620 [Ricinus communis]
2 Hb_013492_010 0.1527248524 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
3 Hb_082407_010 0.1890966708 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
4 Hb_000253_030 0.199362676 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
5 Hb_007333_010 0.2150700704 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_007545_050 0.2152859085 - - -
7 Hb_009051_020 0.2311107339 - - Thioredoxin O1 [Morus notabilis]
8 Hb_182964_010 0.2334183881 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
9 Hb_002025_210 0.2382203723 - - -
10 Hb_001405_130 0.2391197465 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
11 Hb_010068_100 0.2405608337 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
12 Hb_133311_010 0.2526284323 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
13 Hb_008667_040 0.2561974509 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
14 Hb_002045_140 0.2565570828 - - histone acetyltransferase, partial [Triticum aestivum]
15 Hb_000268_010 0.2573219203 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003405_060 0.258132548 - - -
17 Hb_008442_010 0.259069583 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
18 Hb_014834_140 0.2594038089 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
19 Hb_012135_010 0.2622073212 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
20 Hb_003551_010 0.2633839769 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]

Gene co-expression network

sample Hb_163599_010 Hb_163599_010 Hb_013492_010 Hb_013492_010 Hb_163599_010--Hb_013492_010 Hb_082407_010 Hb_082407_010 Hb_163599_010--Hb_082407_010 Hb_000253_030 Hb_000253_030 Hb_163599_010--Hb_000253_030 Hb_007333_010 Hb_007333_010 Hb_163599_010--Hb_007333_010 Hb_007545_050 Hb_007545_050 Hb_163599_010--Hb_007545_050 Hb_009051_020 Hb_009051_020 Hb_163599_010--Hb_009051_020 Hb_013492_010--Hb_082407_010 Hb_003405_060 Hb_003405_060 Hb_013492_010--Hb_003405_060 Hb_001405_130 Hb_001405_130 Hb_013492_010--Hb_001405_130 Hb_008442_010 Hb_008442_010 Hb_013492_010--Hb_008442_010 Hb_014834_140 Hb_014834_140 Hb_013492_010--Hb_014834_140 Hb_000268_010 Hb_000268_010 Hb_082407_010--Hb_000268_010 Hb_000327_290 Hb_000327_290 Hb_082407_010--Hb_000327_290 Hb_082407_010--Hb_003405_060 Hb_182964_010 Hb_182964_010 Hb_082407_010--Hb_182964_010 Hb_007123_060 Hb_007123_060 Hb_082407_010--Hb_007123_060 Hb_010068_100 Hb_010068_100 Hb_000253_030--Hb_010068_100 Hb_136765_010 Hb_136765_010 Hb_000253_030--Hb_136765_010 Hb_155541_010 Hb_155541_010 Hb_000253_030--Hb_155541_010 Hb_003551_010 Hb_003551_010 Hb_000253_030--Hb_003551_010 Hb_008667_040 Hb_008667_040 Hb_000253_030--Hb_008667_040 Hb_007333_010--Hb_082407_010 Hb_007333_010--Hb_000268_010 Hb_007333_010--Hb_007123_060 Hb_007333_010--Hb_008442_010 Hb_000264_290 Hb_000264_290 Hb_007333_010--Hb_000264_290 Hb_133311_010 Hb_133311_010 Hb_007333_010--Hb_133311_010 Hb_000994_110 Hb_000994_110 Hb_007545_050--Hb_000994_110 Hb_010504_030 Hb_010504_030 Hb_007545_050--Hb_010504_030 Hb_007545_050--Hb_182964_010 Hb_166480_010 Hb_166480_010 Hb_007545_050--Hb_166480_010 Hb_006995_040 Hb_006995_040 Hb_007545_050--Hb_006995_040 Hb_007545_050--Hb_082407_010 Hb_003206_100 Hb_003206_100 Hb_009051_020--Hb_003206_100 Hb_009051_020--Hb_003551_010 Hb_007273_020 Hb_007273_020 Hb_009051_020--Hb_007273_020 Hb_021888_040 Hb_021888_040 Hb_009051_020--Hb_021888_040 Hb_009051_020--Hb_000253_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7681 29.2325 10.9257 70.8184 8.53227 77.7862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.9214 89.2303 0 0 0

CAGE analysis