Hb_000253_030

Information

Type -
Description -
Location Contig253: 108171-109737
Sequence    

Annotation

kegg
ID sot:102580264
description uncharacterized LOC102580264
nr
ID KDP25952.1
description hypothetical protein JCGZ_23039 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23039 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000253_030 0.0 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
2 Hb_010068_100 0.1666538916 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
3 Hb_163599_010 0.199362676 - - hypothetical protein RCOM_1579620 [Ricinus communis]
4 Hb_136765_010 0.2035325607 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
5 Hb_155541_010 0.2050204036 - - -
6 Hb_003551_010 0.2109017973 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
7 Hb_008667_040 0.2119574121 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
8 Hb_002228_100 0.2198177117 - - calcineurin-like phosphoesterase [Manihot esculenta]
9 Hb_002141_020 0.2223638473 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
10 Hb_068922_010 0.2237222873 - - hypothetical protein POPTR_0005s17480g [Populus trichocarpa]
11 Hb_007123_060 0.2238928266 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
12 Hb_082407_010 0.2242188445 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
13 Hb_060715_010 0.2318935859 - - PREDICTED: notchless protein homolog [Gossypium raimondii]
14 Hb_006541_090 0.2332324745 - - hypothetical protein VITISV_020777 [Vitis vinifera]
15 Hb_000243_040 0.2340864862 - - -
16 Hb_000363_330 0.2382990107 - - -
17 Hb_009051_020 0.2401658831 - - Thioredoxin O1 [Morus notabilis]
18 Hb_066913_010 0.2407955529 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
19 Hb_013492_010 0.2423250401 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
20 Hb_000264_290 0.2430859418 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]

Gene co-expression network

sample Hb_000253_030 Hb_000253_030 Hb_010068_100 Hb_010068_100 Hb_000253_030--Hb_010068_100 Hb_163599_010 Hb_163599_010 Hb_000253_030--Hb_163599_010 Hb_136765_010 Hb_136765_010 Hb_000253_030--Hb_136765_010 Hb_155541_010 Hb_155541_010 Hb_000253_030--Hb_155541_010 Hb_003551_010 Hb_003551_010 Hb_000253_030--Hb_003551_010 Hb_008667_040 Hb_008667_040 Hb_000253_030--Hb_008667_040 Hb_010068_100--Hb_136765_010 Hb_068922_010 Hb_068922_010 Hb_010068_100--Hb_068922_010 Hb_006541_090 Hb_006541_090 Hb_010068_100--Hb_006541_090 Hb_082407_010 Hb_082407_010 Hb_010068_100--Hb_082407_010 Hb_010068_100--Hb_008667_040 Hb_013492_010 Hb_013492_010 Hb_163599_010--Hb_013492_010 Hb_163599_010--Hb_082407_010 Hb_007333_010 Hb_007333_010 Hb_163599_010--Hb_007333_010 Hb_007545_050 Hb_007545_050 Hb_163599_010--Hb_007545_050 Hb_009051_020 Hb_009051_020 Hb_163599_010--Hb_009051_020 Hb_000331_500 Hb_000331_500 Hb_136765_010--Hb_000331_500 Hb_136765_010--Hb_068922_010 Hb_002141_020 Hb_002141_020 Hb_136765_010--Hb_002141_020 Hb_012867_010 Hb_012867_010 Hb_136765_010--Hb_012867_010 Hb_004241_040 Hb_004241_040 Hb_136765_010--Hb_004241_040 Hb_011485_090 Hb_011485_090 Hb_155541_010--Hb_011485_090 Hb_118228_010 Hb_118228_010 Hb_155541_010--Hb_118228_010 Hb_005928_050 Hb_005928_050 Hb_155541_010--Hb_005928_050 Hb_000302_130 Hb_000302_130 Hb_155541_010--Hb_000302_130 Hb_010913_010 Hb_010913_010 Hb_155541_010--Hb_010913_010 Hb_006907_100 Hb_006907_100 Hb_155541_010--Hb_006907_100 Hb_002388_010 Hb_002388_010 Hb_003551_010--Hb_002388_010 Hb_003551_010--Hb_009051_020 Hb_013394_100 Hb_013394_100 Hb_003551_010--Hb_013394_100 Hb_000111_030 Hb_000111_030 Hb_003551_010--Hb_000111_030 Hb_066913_010 Hb_066913_010 Hb_003551_010--Hb_066913_010 Hb_182713_020 Hb_182713_020 Hb_003551_010--Hb_182713_020 Hb_002045_140 Hb_002045_140 Hb_008667_040--Hb_002045_140 Hb_000264_290 Hb_000264_290 Hb_008667_040--Hb_000264_290 Hb_100105_010 Hb_100105_010 Hb_008667_040--Hb_100105_010 Hb_133311_010 Hb_133311_010 Hb_008667_040--Hb_133311_010 Hb_007123_060 Hb_007123_060 Hb_008667_040--Hb_007123_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.311895 0.345027 0.129749 0.969244 0.496555 0.754109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.618936 0.729893 0 0 0

CAGE analysis