Hb_013492_010

Information

Type -
Description -
Location Contig13492: 2-580
Sequence    

Annotation

kegg
ID gmx:100780551
description uncharacterized LOC100780551
nr
ID XP_012080042.1
description PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4D3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11457 PE=4 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial import inner membrane translocase subunit tim17 tim22 tim23 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013492_010 0.0 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
2 Hb_082407_010 0.1458023549 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
3 Hb_163599_010 0.1527248524 - - hypothetical protein RCOM_1579620 [Ricinus communis]
4 Hb_003405_060 0.1751475319 - - -
5 Hb_001405_130 0.1798886281 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
6 Hb_008442_010 0.1811637195 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
7 Hb_014834_140 0.195874713 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
8 Hb_007545_050 0.2060315779 - - -
9 Hb_010068_100 0.2065817968 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
10 Hb_002228_100 0.2081354702 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_000994_110 0.208422082 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000243_040 0.2088059512 - - -
13 Hb_002025_210 0.2096677693 - - -
14 Hb_182964_010 0.211057366 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
15 Hb_007333_010 0.2117171573 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000010_210 0.2160086869 - - PREDICTED: centromere protein X [Jatropha curcas]
17 Hb_000268_010 0.2161986291 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005199_010 0.2174435043 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000656_340 0.2200161825 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
20 Hb_023732_060 0.2206934526 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]

Gene co-expression network

sample Hb_013492_010 Hb_013492_010 Hb_082407_010 Hb_082407_010 Hb_013492_010--Hb_082407_010 Hb_163599_010 Hb_163599_010 Hb_013492_010--Hb_163599_010 Hb_003405_060 Hb_003405_060 Hb_013492_010--Hb_003405_060 Hb_001405_130 Hb_001405_130 Hb_013492_010--Hb_001405_130 Hb_008442_010 Hb_008442_010 Hb_013492_010--Hb_008442_010 Hb_014834_140 Hb_014834_140 Hb_013492_010--Hb_014834_140 Hb_000268_010 Hb_000268_010 Hb_082407_010--Hb_000268_010 Hb_000327_290 Hb_000327_290 Hb_082407_010--Hb_000327_290 Hb_082407_010--Hb_003405_060 Hb_182964_010 Hb_182964_010 Hb_082407_010--Hb_182964_010 Hb_007123_060 Hb_007123_060 Hb_082407_010--Hb_007123_060 Hb_163599_010--Hb_082407_010 Hb_000253_030 Hb_000253_030 Hb_163599_010--Hb_000253_030 Hb_007333_010 Hb_007333_010 Hb_163599_010--Hb_007333_010 Hb_007545_050 Hb_007545_050 Hb_163599_010--Hb_007545_050 Hb_009051_020 Hb_009051_020 Hb_163599_010--Hb_009051_020 Hb_003405_060--Hb_014834_140 Hb_086703_010 Hb_086703_010 Hb_003405_060--Hb_086703_010 Hb_004502_020 Hb_004502_020 Hb_003405_060--Hb_004502_020 Hb_000155_180 Hb_000155_180 Hb_003405_060--Hb_000155_180 Hb_029888_020 Hb_029888_020 Hb_003405_060--Hb_029888_020 Hb_004807_060 Hb_004807_060 Hb_003405_060--Hb_004807_060 Hb_000562_080 Hb_000562_080 Hb_001405_130--Hb_000562_080 Hb_004048_010 Hb_004048_010 Hb_001405_130--Hb_004048_010 Hb_001405_130--Hb_008442_010 Hb_005199_010 Hb_005199_010 Hb_001405_130--Hb_005199_010 Hb_001405_130--Hb_003405_060 Hb_000025_100 Hb_000025_100 Hb_008442_010--Hb_000025_100 Hb_008442_010--Hb_029888_020 Hb_121550_010 Hb_121550_010 Hb_008442_010--Hb_121550_010 Hb_147123_010 Hb_147123_010 Hb_008442_010--Hb_147123_010 Hb_014834_140--Hb_086703_010 Hb_014834_140--Hb_004807_060 Hb_001610_130 Hb_001610_130 Hb_014834_140--Hb_001610_130 Hb_003043_070 Hb_003043_070 Hb_014834_140--Hb_003043_070 Hb_001057_050 Hb_001057_050 Hb_014834_140--Hb_001057_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3081 3.46474 8.36596 29.8321 5.54369 34.3063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.2575 45.3785 0.522046 0.920582 0.286443

CAGE analysis