Hb_000025_100

Information

Type -
Description -
Location Contig25: 100325-101658
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26046: 101806-103270 , PASA_asmbl_26047: 100437-103253 , PASA_asmbl_26048: 100505-101193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_100 0.0 - - -
2 Hb_126112_010 0.1739717613 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
3 Hb_121550_010 0.1823342916 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008442_010 0.1876583141 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
5 Hb_147123_010 0.1877241613 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
6 Hb_021888_110 0.1932582319 - - -
7 Hb_071923_010 0.199407972 - - -
8 Hb_012305_040 0.2003482688 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
9 Hb_004502_050 0.2023173478 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
10 Hb_000265_130 0.217946167 - - -
11 Hb_000001_040 0.2184152376 - - unnamed protein product [Coffea canephora]
12 Hb_003581_010 0.2204621887 - - hypothetical protein VITISV_004687 [Vitis vinifera]
13 Hb_115919_010 0.2214815976 - - unknown [Lotus japonicus]
14 Hb_000523_100 0.2233795029 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
15 Hb_000931_030 0.2261932124 - - PREDICTED: uncharacterized protein LOC105130278 [Populus euphratica]
16 Hb_004243_010 0.228594648 - - hypothetical protein JCGZ_01580 [Jatropha curcas]
17 Hb_000048_090 0.2292233977 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
18 Hb_168737_010 0.22940283 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000996_170 0.2296794521 - - unknown [Glycine max]
20 Hb_144898_010 0.2343220226 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000025_100 Hb_000025_100 Hb_126112_010 Hb_126112_010 Hb_000025_100--Hb_126112_010 Hb_121550_010 Hb_121550_010 Hb_000025_100--Hb_121550_010 Hb_008442_010 Hb_008442_010 Hb_000025_100--Hb_008442_010 Hb_147123_010 Hb_147123_010 Hb_000025_100--Hb_147123_010 Hb_021888_110 Hb_021888_110 Hb_000025_100--Hb_021888_110 Hb_071923_010 Hb_071923_010 Hb_000025_100--Hb_071923_010 Hb_000523_100 Hb_000523_100 Hb_126112_010--Hb_000523_100 Hb_003061_010 Hb_003061_010 Hb_126112_010--Hb_003061_010 Hb_156526_010 Hb_156526_010 Hb_126112_010--Hb_156526_010 Hb_126112_010--Hb_021888_110 Hb_003581_010 Hb_003581_010 Hb_126112_010--Hb_003581_010 Hb_000832_240 Hb_000832_240 Hb_121550_010--Hb_000832_240 Hb_121550_010--Hb_147123_010 Hb_121550_010--Hb_008442_010 Hb_000122_030 Hb_000122_030 Hb_121550_010--Hb_000122_030 Hb_115919_010 Hb_115919_010 Hb_121550_010--Hb_115919_010 Hb_013492_010 Hb_013492_010 Hb_008442_010--Hb_013492_010 Hb_001405_130 Hb_001405_130 Hb_008442_010--Hb_001405_130 Hb_029888_020 Hb_029888_020 Hb_008442_010--Hb_029888_020 Hb_008442_010--Hb_147123_010 Hb_007545_050 Hb_007545_050 Hb_147123_010--Hb_007545_050 Hb_000048_090 Hb_000048_090 Hb_147123_010--Hb_000048_090 Hb_000265_130 Hb_000265_130 Hb_147123_010--Hb_000265_130 Hb_021888_110--Hb_115919_010 Hb_001095_060 Hb_001095_060 Hb_021888_110--Hb_001095_060 Hb_144101_010 Hb_144101_010 Hb_021888_110--Hb_144101_010 Hb_121236_010 Hb_121236_010 Hb_021888_110--Hb_121236_010 Hb_001722_020 Hb_001722_020 Hb_071923_010--Hb_001722_020 Hb_002249_110 Hb_002249_110 Hb_071923_010--Hb_002249_110 Hb_088774_010 Hb_088774_010 Hb_071923_010--Hb_088774_010 Hb_144898_010 Hb_144898_010 Hb_071923_010--Hb_144898_010 Hb_000295_090 Hb_000295_090 Hb_071923_010--Hb_000295_090 Hb_003297_020 Hb_003297_020 Hb_071923_010--Hb_003297_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.63072 0.698224 0.589117 2.28107 1.15594 15.2373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.30551 3.41642 0 0.28891 0

CAGE analysis