Hb_003061_010

Information

Type -
Description -
Location Contig3061: 26637-27831
Sequence    

Annotation

kegg
ID sbi:SORBI_01g039870
description SORBIDRAFT_01g039870, Sb01g039870; hypothetical protein
nr
ID XP_002465493.1
description hypothetical protein SORBIDRAFT_01g039870 [Sorghum bicolor]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID C5WQ27
description Putative uncharacterized protein Sb01g039870 OS=Sorghum bicolor GN=Sb01g039870 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32374: 27472-27858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003061_010 0.0 - - hypothetical protein SORBIDRAFT_01g039870 [Sorghum bicolor]
2 Hb_000230_040 0.1503601674 - - PREDICTED: protein MON2 homolog isoform X2 [Vitis vinifera]
3 Hb_126112_010 0.1636011731 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
4 Hb_000891_040 0.1655983429 - - hypothetical protein JCGZ_11252 [Jatropha curcas]
5 Hb_156526_010 0.1737215897 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
6 Hb_002151_080 0.194569782 - - hypothetical protein MIMGU_mgv1a000572mg [Erythranthe guttata]
7 Hb_005839_050 0.1950203672 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
8 Hb_087762_010 0.1985180369 - - thioredoxin-like family protein [Hevea brasiliensis]
9 Hb_005714_130 0.2069034846 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
10 Hb_000088_020 0.2069992887 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
11 Hb_176117_010 0.2099181084 - - Cold-inducible RNA-binding protein [Morus notabilis]
12 Hb_006018_070 0.2114391015 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
13 Hb_181320_010 0.2155712124 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
14 Hb_002253_040 0.2180526728 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
15 Hb_012807_080 0.2228301593 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
16 Hb_004109_060 0.2232064316 - - hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
17 Hb_144898_010 0.2274965083 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
18 Hb_003297_010 0.2298829292 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
19 Hb_000122_140 0.2299604605 - - -
20 Hb_096490_020 0.2304008723 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]

Gene co-expression network

sample Hb_003061_010 Hb_003061_010 Hb_000230_040 Hb_000230_040 Hb_003061_010--Hb_000230_040 Hb_126112_010 Hb_126112_010 Hb_003061_010--Hb_126112_010 Hb_000891_040 Hb_000891_040 Hb_003061_010--Hb_000891_040 Hb_156526_010 Hb_156526_010 Hb_003061_010--Hb_156526_010 Hb_002151_080 Hb_002151_080 Hb_003061_010--Hb_002151_080 Hb_005839_050 Hb_005839_050 Hb_003061_010--Hb_005839_050 Hb_000230_040--Hb_002151_080 Hb_000088_020 Hb_000088_020 Hb_000230_040--Hb_000088_020 Hb_002253_040 Hb_002253_040 Hb_000230_040--Hb_002253_040 Hb_000785_080 Hb_000785_080 Hb_000230_040--Hb_000785_080 Hb_170487_010 Hb_170487_010 Hb_000230_040--Hb_170487_010 Hb_000523_100 Hb_000523_100 Hb_126112_010--Hb_000523_100 Hb_000025_100 Hb_000025_100 Hb_126112_010--Hb_000025_100 Hb_126112_010--Hb_156526_010 Hb_021888_110 Hb_021888_110 Hb_126112_010--Hb_021888_110 Hb_003581_010 Hb_003581_010 Hb_126112_010--Hb_003581_010 Hb_006637_060 Hb_006637_060 Hb_000891_040--Hb_006637_060 Hb_007632_250 Hb_007632_250 Hb_000891_040--Hb_007632_250 Hb_119583_010 Hb_119583_010 Hb_000891_040--Hb_119583_010 Hb_000510_090 Hb_000510_090 Hb_000891_040--Hb_000510_090 Hb_000442_100 Hb_000442_100 Hb_000891_040--Hb_000442_100 Hb_181320_010 Hb_181320_010 Hb_000891_040--Hb_181320_010 Hb_002045_140 Hb_002045_140 Hb_156526_010--Hb_002045_140 Hb_003073_050 Hb_003073_050 Hb_156526_010--Hb_003073_050 Hb_005511_100 Hb_005511_100 Hb_156526_010--Hb_005511_100 Hb_003297_010 Hb_003297_010 Hb_156526_010--Hb_003297_010 Hb_000032_060 Hb_000032_060 Hb_002151_080--Hb_000032_060 Hb_002151_080--Hb_000088_020 Hb_000523_090 Hb_000523_090 Hb_002151_080--Hb_000523_090 Hb_000181_180 Hb_000181_180 Hb_002151_080--Hb_000181_180 Hb_005916_030 Hb_005916_030 Hb_005839_050--Hb_005916_030 Hb_005839_050--Hb_002151_080 Hb_006018_070 Hb_006018_070 Hb_005839_050--Hb_006018_070 Hb_049944_010 Hb_049944_010 Hb_005839_050--Hb_049944_010 Hb_003964_090 Hb_003964_090 Hb_005839_050--Hb_003964_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24774 0.51586 0.197651 0.242578 0.471429 2.67497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.482159 1.13688 0 0.403338 0.147391

CAGE analysis