Hb_049944_010

Information

Type -
Description -
Location Contig49944: 217-527
Sequence    

Annotation

kegg
ID pop:POPTR_0015s10440g
description POPTRDRAFT_575319; transducin family protein
nr
ID XP_002321685.1
description transducin family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IF75
description Transducin family protein OS=Populus trichocarpa GN=POPTR_0015s10440g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049944_010 0.0 - - transducin family protein [Populus trichocarpa]
2 Hb_137461_010 0.2200119725 - - hypothetical protein POPTR_0011s03680g [Populus trichocarpa]
3 Hb_005839_050 0.2202455957 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
4 Hb_003964_090 0.22931189 - - PREDICTED: 14-3-3-like protein GF14 iota [Jatropha curcas]
5 Hb_004137_080 0.2301426006 - - conserved hypothetical protein [Ricinus communis]
6 Hb_027472_030 0.2351376404 - - RNA helicase 36, partial [Manihot esculenta]
7 Hb_001912_070 0.2566367909 - - hypothetical protein POPTR_0003s03380g [Populus trichocarpa]
8 Hb_001604_050 0.2699117327 - - PREDICTED: uncharacterized protein LOC105639208 [Jatropha curcas]
9 Hb_002151_080 0.2739808932 - - hypothetical protein MIMGU_mgv1a000572mg [Erythranthe guttata]
10 Hb_001733_060 0.2754388096 - - PREDICTED: uncharacterized protein LOC104431099 [Eucalyptus grandis]
11 Hb_005916_030 0.2854256931 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
12 Hb_003124_210 0.2901297382 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000062_420 0.2910405154 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012052_010 0.294084361 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
15 Hb_028639_050 0.2965665315 - - Anopheles gambiae str. PEST AGAP012660-PA [Anopheles gambiae str. PEST]
16 Hb_150379_010 0.2977081927 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
17 Hb_033363_070 0.2984597743 - - PREDICTED: LOW QUALITY PROTEIN: methionine aminopeptidase 1B, chloroplastic, partial [Populus euphratica]
18 Hb_032496_020 0.3033025866 - - -
19 Hb_006018_070 0.3058405603 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
20 Hb_002205_050 0.3063950215 - - hypothetical protein JCGZ_03335 [Jatropha curcas]

Gene co-expression network

sample Hb_049944_010 Hb_049944_010 Hb_137461_010 Hb_137461_010 Hb_049944_010--Hb_137461_010 Hb_005839_050 Hb_005839_050 Hb_049944_010--Hb_005839_050 Hb_003964_090 Hb_003964_090 Hb_049944_010--Hb_003964_090 Hb_004137_080 Hb_004137_080 Hb_049944_010--Hb_004137_080 Hb_027472_030 Hb_027472_030 Hb_049944_010--Hb_027472_030 Hb_001912_070 Hb_001912_070 Hb_049944_010--Hb_001912_070 Hb_005916_030 Hb_005916_030 Hb_137461_010--Hb_005916_030 Hb_000575_080 Hb_000575_080 Hb_137461_010--Hb_000575_080 Hb_075964_010 Hb_075964_010 Hb_137461_010--Hb_075964_010 Hb_000062_420 Hb_000062_420 Hb_137461_010--Hb_000062_420 Hb_137461_010--Hb_001912_070 Hb_003061_010 Hb_003061_010 Hb_005839_050--Hb_003061_010 Hb_005839_050--Hb_005916_030 Hb_002151_080 Hb_002151_080 Hb_005839_050--Hb_002151_080 Hb_006018_070 Hb_006018_070 Hb_005839_050--Hb_006018_070 Hb_005839_050--Hb_003964_090 Hb_012052_010 Hb_012052_010 Hb_003964_090--Hb_012052_010 Hb_001427_060 Hb_001427_060 Hb_003964_090--Hb_001427_060 Hb_013818_050 Hb_013818_050 Hb_003964_090--Hb_013818_050 Hb_000656_100 Hb_000656_100 Hb_003964_090--Hb_000656_100 Hb_005305_060 Hb_005305_060 Hb_004137_080--Hb_005305_060 Hb_028639_050 Hb_028639_050 Hb_004137_080--Hb_028639_050 Hb_000329_770 Hb_000329_770 Hb_004137_080--Hb_000329_770 Hb_007124_010 Hb_007124_010 Hb_004137_080--Hb_007124_010 Hb_001662_160 Hb_001662_160 Hb_004137_080--Hb_001662_160 Hb_012807_080 Hb_012807_080 Hb_004137_080--Hb_012807_080 Hb_027472_030--Hb_012052_010 Hb_027472_030--Hb_005305_060 Hb_073367_010 Hb_073367_010 Hb_027472_030--Hb_073367_010 Hb_021576_060 Hb_021576_060 Hb_027472_030--Hb_021576_060 Hb_000832_240 Hb_000832_240 Hb_027472_030--Hb_000832_240 Hb_027472_030--Hb_028639_050 Hb_172970_010 Hb_172970_010 Hb_001912_070--Hb_172970_010 Hb_003206_020 Hb_003206_020 Hb_001912_070--Hb_003206_020 Hb_001912_070--Hb_004137_080 Hb_150379_010 Hb_150379_010 Hb_001912_070--Hb_150379_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.38632 1.00576 0 0 1.12611 5.19607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.63407 2.60738 0 0.92013 1.6605

CAGE analysis