Hb_004137_080

Information

Type -
Description -
Location Contig4137: 37475-42821
Sequence    

Annotation

kegg
ID rcu:RCOM_0138530
description hypothetical protein
nr
ID XP_002526161.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I037
description Protein trichome berefringence-like 7 OS=Arabidopsis thaliana GN=TBL7 PE=3 SV=1
trembl
ID B9SJJ2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0138530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40977: 36573-37040 , PASA_asmbl_40979: 37418-42581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004137_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005305_060 0.1778062594 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
3 Hb_028639_050 0.1975103295 - - Anopheles gambiae str. PEST AGAP012660-PA [Anopheles gambiae str. PEST]
4 Hb_000329_770 0.200553062 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007124_010 0.2128583015 - - unnamed protein product [Coffea canephora]
6 Hb_001662_160 0.225376828 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
7 Hb_012807_080 0.2299122871 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
8 Hb_049944_010 0.2301426006 - - transducin family protein [Populus trichocarpa]
9 Hb_000062_420 0.2307787365 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005916_030 0.2318267199 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
11 Hb_000414_030 0.2333485614 - - -
12 Hb_001427_180 0.2375289856 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
13 Hb_005965_010 0.2394698316 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
14 Hb_001722_020 0.2414025251 - - -
15 Hb_006502_080 0.2426042507 - - -
16 Hb_027472_030 0.2427340572 - - RNA helicase 36, partial [Manihot esculenta]
17 Hb_002205_050 0.2451944588 - - hypothetical protein JCGZ_03335 [Jatropha curcas]
18 Hb_007012_020 0.2476520815 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
19 Hb_010298_010 0.2483471581 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
20 Hb_001488_110 0.2527385951 - - -

Gene co-expression network

sample Hb_004137_080 Hb_004137_080 Hb_005305_060 Hb_005305_060 Hb_004137_080--Hb_005305_060 Hb_028639_050 Hb_028639_050 Hb_004137_080--Hb_028639_050 Hb_000329_770 Hb_000329_770 Hb_004137_080--Hb_000329_770 Hb_007124_010 Hb_007124_010 Hb_004137_080--Hb_007124_010 Hb_001662_160 Hb_001662_160 Hb_004137_080--Hb_001662_160 Hb_012807_080 Hb_012807_080 Hb_004137_080--Hb_012807_080 Hb_144898_010 Hb_144898_010 Hb_005305_060--Hb_144898_010 Hb_005305_060--Hb_000329_770 Hb_027445_060 Hb_027445_060 Hb_005305_060--Hb_027445_060 Hb_001722_020 Hb_001722_020 Hb_005305_060--Hb_001722_020 Hb_115919_010 Hb_115919_010 Hb_005305_060--Hb_115919_010 Hb_005965_010 Hb_005965_010 Hb_005305_060--Hb_005965_010 Hb_028639_050--Hb_000329_770 Hb_000453_260 Hb_000453_260 Hb_028639_050--Hb_000453_260 Hb_004502_050 Hb_004502_050 Hb_028639_050--Hb_004502_050 Hb_028639_050--Hb_005305_060 Hb_002197_030 Hb_002197_030 Hb_028639_050--Hb_002197_030 Hb_013405_130 Hb_013405_130 Hb_028639_050--Hb_013405_130 Hb_015057_010 Hb_015057_010 Hb_000329_770--Hb_015057_010 Hb_011016_090 Hb_011016_090 Hb_000329_770--Hb_011016_090 Hb_006502_080 Hb_006502_080 Hb_000329_770--Hb_006502_080 Hb_002259_150 Hb_002259_150 Hb_000329_770--Hb_002259_150 Hb_000380_010 Hb_000380_010 Hb_000329_770--Hb_000380_010 Hb_002783_060 Hb_002783_060 Hb_007124_010--Hb_002783_060 Hb_005731_140 Hb_005731_140 Hb_007124_010--Hb_005731_140 Hb_007124_010--Hb_005305_060 Hb_007124_010--Hb_028639_050 Hb_007124_010--Hb_000329_770 Hb_006846_140 Hb_006846_140 Hb_007124_010--Hb_006846_140 Hb_121236_010 Hb_121236_010 Hb_001662_160--Hb_121236_010 Hb_001662_160--Hb_027445_060 Hb_001488_110 Hb_001488_110 Hb_001662_160--Hb_001488_110 Hb_001662_160--Hb_005305_060 Hb_068946_010 Hb_068946_010 Hb_001662_160--Hb_068946_010 Hb_001662_160--Hb_115919_010 Hb_006455_110 Hb_006455_110 Hb_012807_080--Hb_006455_110 Hb_001477_010 Hb_001477_010 Hb_012807_080--Hb_001477_010 Hb_006455_090 Hb_006455_090 Hb_012807_080--Hb_006455_090 Hb_002046_040 Hb_002046_040 Hb_012807_080--Hb_002046_040 Hb_003299_090 Hb_003299_090 Hb_012807_080--Hb_003299_090 Hb_003711_040 Hb_003711_040 Hb_012807_080--Hb_003711_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.689092 0.97439 0.231179 0 3.23778 12.5253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65064 3.77475 1.10689 0.981012 1.19123

CAGE analysis