Hb_001662_160

Information

Type -
Description -
Location Contig1662: 150011-151850
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021315mg
description hypothetical protein
nr
ID XP_007212815.1
description hypothetical protein PRUPE_ppa021315mg [Prunus persica]
swissprot
ID Q9STF3
description Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
trembl
ID M5WJX7
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021315mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_160 0.0 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
2 Hb_121236_010 0.1972759369 - - geranyl-diphosphate synthase [Hevea brasiliensis]
3 Hb_027445_060 0.2020902952 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
4 Hb_001488_110 0.2094585642 - - -
5 Hb_005305_060 0.2121092591 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
6 Hb_068946_010 0.2132106286 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
7 Hb_115919_010 0.2237732809 - - unknown [Lotus japonicus]
8 Hb_004137_080 0.225376828 - - conserved hypothetical protein [Ricinus communis]
9 Hb_061581_010 0.233548693 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
10 Hb_000200_040 0.2374839549 - - -
11 Hb_005935_010 0.240652126 - - -
12 Hb_001427_180 0.2436992076 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
13 Hb_135403_010 0.2457552518 - - HEV1.1 [Hevea brasiliensis]
14 Hb_015930_010 0.2471973308 - - uncharacterized protein LOC100499930 [Glycine max]
15 Hb_176117_010 0.2477029168 - - Cold-inducible RNA-binding protein [Morus notabilis]
16 Hb_001722_020 0.2479315876 - - -
17 Hb_000184_120 0.2500813079 - - hypothetical protein JCGZ_18526 [Jatropha curcas]
18 Hb_003073_130 0.2535705459 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
19 Hb_002078_060 0.2580685995 - - hypothetical protein JCGZ_17943 [Jatropha curcas]
20 Hb_001095_060 0.2587049218 - - Uncharacterized protein TCM_012505 [Theobroma cacao]

Gene co-expression network

sample Hb_001662_160 Hb_001662_160 Hb_121236_010 Hb_121236_010 Hb_001662_160--Hb_121236_010 Hb_027445_060 Hb_027445_060 Hb_001662_160--Hb_027445_060 Hb_001488_110 Hb_001488_110 Hb_001662_160--Hb_001488_110 Hb_005305_060 Hb_005305_060 Hb_001662_160--Hb_005305_060 Hb_068946_010 Hb_068946_010 Hb_001662_160--Hb_068946_010 Hb_115919_010 Hb_115919_010 Hb_001662_160--Hb_115919_010 Hb_121236_010--Hb_115919_010 Hb_121236_010--Hb_027445_060 Hb_061581_010 Hb_061581_010 Hb_121236_010--Hb_061581_010 Hb_001095_060 Hb_001095_060 Hb_121236_010--Hb_001095_060 Hb_121236_010--Hb_005305_060 Hb_135403_010 Hb_135403_010 Hb_121236_010--Hb_135403_010 Hb_027445_060--Hb_115919_010 Hb_027445_060--Hb_068946_010 Hb_027445_060--Hb_001095_060 Hb_003813_100 Hb_003813_100 Hb_027445_060--Hb_003813_100 Hb_027445_060--Hb_005305_060 Hb_077562_040 Hb_077562_040 Hb_001488_110--Hb_077562_040 Hb_001488_110--Hb_027445_060 Hb_000184_120 Hb_000184_120 Hb_001488_110--Hb_000184_120 Hb_001488_110--Hb_068946_010 Hb_004025_030 Hb_004025_030 Hb_001488_110--Hb_004025_030 Hb_000563_530 Hb_000563_530 Hb_001488_110--Hb_000563_530 Hb_144898_010 Hb_144898_010 Hb_005305_060--Hb_144898_010 Hb_000329_770 Hb_000329_770 Hb_005305_060--Hb_000329_770 Hb_001722_020 Hb_001722_020 Hb_005305_060--Hb_001722_020 Hb_005305_060--Hb_115919_010 Hb_005965_010 Hb_005965_010 Hb_005305_060--Hb_005965_010 Hb_068946_010--Hb_001095_060 Hb_004072_010 Hb_004072_010 Hb_068946_010--Hb_004072_010 Hb_004968_060 Hb_004968_060 Hb_068946_010--Hb_004968_060 Hb_005935_010 Hb_005935_010 Hb_068946_010--Hb_005935_010 Hb_115919_010--Hb_001095_060 Hb_115919_010--Hb_061581_010 Hb_000122_030 Hb_000122_030 Hb_115919_010--Hb_000122_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0531439 0.0135851 0 0 0.0799175 0.429631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0373663 0.117577 0.054867 0.0117606 0

CAGE analysis