Hb_005965_010

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig5965: 17032-18518
Sequence    

Annotation

kegg
ID mdm:103446948
description transcription repressor KAN1-like
nr
ID XP_012082211.1
description PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
swissprot
ID Q9SAK5
description Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2
trembl
ID A0A067K9Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16414 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor apl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50391: 18123-18395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005965_010 0.0 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
2 Hb_006455_110 0.0730914773 - - bromodomain-containing protein, putative [Ricinus communis]
3 Hb_073339_010 0.120301266 - - hypothetical protein 30 [Hevea brasiliensis]
4 Hb_106005_010 0.1298829371 - - EG5651 [Manihot esculenta]
5 Hb_012807_080 0.1342711994 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
6 Hb_006455_080 0.1363532952 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
7 Hb_006455_090 0.1379021411 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
8 Hb_002960_050 0.1394517168 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
9 Hb_000295_100 0.1409121654 - - -
10 Hb_000200_040 0.1419568114 - - -
11 Hb_000608_180 0.144537734 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]
12 Hb_006252_010 0.1446117855 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
13 Hb_001976_050 0.1525137119 - - PREDICTED: protein SKIP34 [Jatropha curcas]
14 Hb_010298_010 0.1532894384 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
15 Hb_000878_130 0.1551990392 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005305_060 0.1558083859 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
17 Hb_000035_130 0.15674829 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
18 Hb_088065_010 0.1575136156 - - hypothetical protein glysoja_007934 [Glycine soja]
19 Hb_002023_020 0.1594534539 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
20 Hb_001722_020 0.1595181475 - - -

Gene co-expression network

sample Hb_005965_010 Hb_005965_010 Hb_006455_110 Hb_006455_110 Hb_005965_010--Hb_006455_110 Hb_073339_010 Hb_073339_010 Hb_005965_010--Hb_073339_010 Hb_106005_010 Hb_106005_010 Hb_005965_010--Hb_106005_010 Hb_012807_080 Hb_012807_080 Hb_005965_010--Hb_012807_080 Hb_006455_080 Hb_006455_080 Hb_005965_010--Hb_006455_080 Hb_006455_090 Hb_006455_090 Hb_005965_010--Hb_006455_090 Hb_006455_110--Hb_006455_090 Hb_006455_110--Hb_006455_080 Hb_000295_100 Hb_000295_100 Hb_006455_110--Hb_000295_100 Hb_006455_110--Hb_012807_080 Hb_012286_050 Hb_012286_050 Hb_006455_110--Hb_012286_050 Hb_000035_130 Hb_000035_130 Hb_073339_010--Hb_000035_130 Hb_073339_010--Hb_006455_110 Hb_001976_050 Hb_001976_050 Hb_073339_010--Hb_001976_050 Hb_006723_020 Hb_006723_020 Hb_073339_010--Hb_006723_020 Hb_073339_010--Hb_012807_080 Hb_000001_040 Hb_000001_040 Hb_106005_010--Hb_000001_040 Hb_005731_140 Hb_005731_140 Hb_106005_010--Hb_005731_140 Hb_002482_060 Hb_002482_060 Hb_106005_010--Hb_002482_060 Hb_007188_020 Hb_007188_020 Hb_106005_010--Hb_007188_020 Hb_136731_010 Hb_136731_010 Hb_106005_010--Hb_136731_010 Hb_001477_010 Hb_001477_010 Hb_012807_080--Hb_001477_010 Hb_012807_080--Hb_006455_090 Hb_002046_040 Hb_002046_040 Hb_012807_080--Hb_002046_040 Hb_003299_090 Hb_003299_090 Hb_012807_080--Hb_003299_090 Hb_003711_040 Hb_003711_040 Hb_012807_080--Hb_003711_040 Hb_006455_080--Hb_006455_090 Hb_000248_050 Hb_000248_050 Hb_006455_080--Hb_000248_050 Hb_006455_080--Hb_003711_040 Hb_006455_080--Hb_000295_100 Hb_000453_080 Hb_000453_080 Hb_006455_080--Hb_000453_080 Hb_006455_090--Hb_003711_040 Hb_006455_090--Hb_012286_050 Hb_000307_200 Hb_000307_200 Hb_006455_090--Hb_000307_200 Hb_020902_010 Hb_020902_010 Hb_006455_090--Hb_020902_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.7277 47.316 15.4568 56.9229 82.5206 488.524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
112.325 78.2766 67.9224 47.0219 15.6787

CAGE analysis