Hb_000453_080

Information

Type -
Description -
Location Contig453: 43964-46322
Sequence    

Annotation

kegg
ID rcu:RCOM_1166000
description nucleic acid binding protein, putative
nr
ID XP_002532850.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q84Y18
description CAX-interacting protein 4 OS=Arabidopsis thaliana GN=CXIP4 PE=1 SV=2
trembl
ID B9T3N1
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1166000 PE=4 SV=1
Gene Ontology
ID GO:0005737
description cax-interacting protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43255: 43983-46268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_080 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_012016_020 0.0795193568 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
3 Hb_001582_030 0.0912338117 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
4 Hb_005000_270 0.0972698729 - - unnamed protein product [Vitis vinifera]
5 Hb_005635_010 0.0985631465 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
6 Hb_002105_080 0.10012987 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
7 Hb_001486_120 0.1036203406 - - PREDICTED: importin-5-like [Jatropha curcas]
8 Hb_000805_310 0.1041229808 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
9 Hb_000136_150 0.10456102 - - hypothetical protein VITISV_038366 [Vitis vinifera]
10 Hb_009421_030 0.1078153443 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
11 Hb_011497_010 0.10814496 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
12 Hb_002918_070 0.1101952342 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
13 Hb_005295_040 0.1109718801 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
14 Hb_081879_030 0.1113554987 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
15 Hb_003711_040 0.1128520415 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
16 Hb_008528_010 0.1130898058 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
17 Hb_005914_090 0.1149389306 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
18 Hb_002341_030 0.1169644315 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
19 Hb_001433_190 0.1188924583 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
20 Hb_007348_040 0.119077419 transcription factor TF Family: PHD hypothetical protein RCOM_1314010 [Ricinus communis]

Gene co-expression network

sample Hb_000453_080 Hb_000453_080 Hb_012016_020 Hb_012016_020 Hb_000453_080--Hb_012016_020 Hb_001582_030 Hb_001582_030 Hb_000453_080--Hb_001582_030 Hb_005000_270 Hb_005000_270 Hb_000453_080--Hb_005000_270 Hb_005635_010 Hb_005635_010 Hb_000453_080--Hb_005635_010 Hb_002105_080 Hb_002105_080 Hb_000453_080--Hb_002105_080 Hb_001486_120 Hb_001486_120 Hb_000453_080--Hb_001486_120 Hb_002341_030 Hb_002341_030 Hb_012016_020--Hb_002341_030 Hb_001871_040 Hb_001871_040 Hb_012016_020--Hb_001871_040 Hb_005399_010 Hb_005399_010 Hb_012016_020--Hb_005399_010 Hb_000906_060 Hb_000906_060 Hb_012016_020--Hb_000906_060 Hb_008528_010 Hb_008528_010 Hb_012016_020--Hb_008528_010 Hb_001582_030--Hb_005000_270 Hb_000212_280 Hb_000212_280 Hb_001582_030--Hb_000212_280 Hb_000134_360 Hb_000134_360 Hb_001582_030--Hb_000134_360 Hb_019871_020 Hb_019871_020 Hb_001582_030--Hb_019871_020 Hb_001582_030--Hb_008528_010 Hb_000732_020 Hb_000732_020 Hb_001582_030--Hb_000732_020 Hb_002918_070 Hb_002918_070 Hb_005000_270--Hb_002918_070 Hb_005000_270--Hb_000134_360 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_005000_270--Hb_000212_280 Hb_003716_020 Hb_003716_020 Hb_005000_270--Hb_003716_020 Hb_000814_090 Hb_000814_090 Hb_005635_010--Hb_000814_090 Hb_005295_040 Hb_005295_040 Hb_005635_010--Hb_005295_040 Hb_001040_160 Hb_001040_160 Hb_005635_010--Hb_001040_160 Hb_002725_070 Hb_002725_070 Hb_005635_010--Hb_002725_070 Hb_003299_090 Hb_003299_090 Hb_005635_010--Hb_003299_090 Hb_000078_100 Hb_000078_100 Hb_005635_010--Hb_000078_100 Hb_006816_300 Hb_006816_300 Hb_002105_080--Hb_006816_300 Hb_007849_020 Hb_007849_020 Hb_002105_080--Hb_007849_020 Hb_000116_280 Hb_000116_280 Hb_002105_080--Hb_000116_280 Hb_002105_080--Hb_005295_040 Hb_000227_380 Hb_000227_380 Hb_002105_080--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_002105_080--Hb_000250_070 Hb_000136_150 Hb_000136_150 Hb_001486_120--Hb_000136_150 Hb_001486_120--Hb_000134_360 Hb_000805_310 Hb_000805_310 Hb_001486_120--Hb_000805_310 Hb_000317_440 Hb_000317_440 Hb_001486_120--Hb_000317_440 Hb_009421_030 Hb_009421_030 Hb_001486_120--Hb_009421_030 Hb_001486_120--Hb_008528_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
119.198 67.046 16.4402 29.1331 168.994 286.098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.5299 24.5976 69.2864 53.7173 24.2616

CAGE analysis