Hb_006455_080

Information

Type -
Description -
Location Contig6455: 131489-136374
Sequence    

Annotation

kegg
ID mdm:103406282
description uncharacterized LOC103406282
nr
ID XP_010248224.1
description PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A059ACZ4
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_J011092 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52328: 131055-165306 , PASA_asmbl_52329: 131055-165306 , PASA_asmbl_52330: 132755-149352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006455_080 0.0 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
2 Hb_006455_090 0.0654894189 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
3 Hb_006455_110 0.0958485691 - - bromodomain-containing protein, putative [Ricinus communis]
4 Hb_000248_050 0.1137015938 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
5 Hb_003711_040 0.1140505424 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
6 Hb_000295_100 0.1204176559 - - -
7 Hb_000453_080 0.1263948296 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_001477_010 0.130326286 - - PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum]
9 Hb_012286_050 0.1349472119 - - PREDICTED: syntaxin-61 [Jatropha curcas]
10 Hb_005965_010 0.1363532952 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
11 Hb_000307_200 0.1385612361 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
12 Hb_000152_740 0.1392760733 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
13 Hb_012807_080 0.1398918051 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
14 Hb_139859_010 0.1411727788 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
15 Hb_000878_130 0.1418679108 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006026_040 0.1460599353 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
17 Hb_063047_010 0.1463005027 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
18 Hb_020902_010 0.1470301391 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
19 Hb_000200_040 0.1473114821 - - -
20 Hb_002290_060 0.1474905693 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]

Gene co-expression network

sample Hb_006455_080 Hb_006455_080 Hb_006455_090 Hb_006455_090 Hb_006455_080--Hb_006455_090 Hb_006455_110 Hb_006455_110 Hb_006455_080--Hb_006455_110 Hb_000248_050 Hb_000248_050 Hb_006455_080--Hb_000248_050 Hb_003711_040 Hb_003711_040 Hb_006455_080--Hb_003711_040 Hb_000295_100 Hb_000295_100 Hb_006455_080--Hb_000295_100 Hb_000453_080 Hb_000453_080 Hb_006455_080--Hb_000453_080 Hb_006455_090--Hb_006455_110 Hb_006455_090--Hb_003711_040 Hb_012286_050 Hb_012286_050 Hb_006455_090--Hb_012286_050 Hb_000307_200 Hb_000307_200 Hb_006455_090--Hb_000307_200 Hb_020902_010 Hb_020902_010 Hb_006455_090--Hb_020902_010 Hb_005965_010 Hb_005965_010 Hb_006455_110--Hb_005965_010 Hb_006455_110--Hb_000295_100 Hb_012807_080 Hb_012807_080 Hb_006455_110--Hb_012807_080 Hb_006455_110--Hb_012286_050 Hb_000152_740 Hb_000152_740 Hb_000248_050--Hb_000152_740 Hb_118301_010 Hb_118301_010 Hb_000248_050--Hb_118301_010 Hb_002918_070 Hb_002918_070 Hb_000248_050--Hb_002918_070 Hb_004881_050 Hb_004881_050 Hb_000248_050--Hb_004881_050 Hb_005000_270 Hb_005000_270 Hb_000248_050--Hb_005000_270 Hb_083043_010 Hb_083043_010 Hb_003711_040--Hb_083043_010 Hb_002811_120 Hb_002811_120 Hb_003711_040--Hb_002811_120 Hb_003711_040--Hb_004881_050 Hb_001609_010 Hb_001609_010 Hb_003711_040--Hb_001609_010 Hb_003711_040--Hb_005000_270 Hb_000295_100--Hb_006455_090 Hb_002960_050 Hb_002960_050 Hb_000295_100--Hb_002960_050 Hb_000295_100--Hb_012807_080 Hb_000295_100--Hb_005965_010 Hb_012016_020 Hb_012016_020 Hb_000453_080--Hb_012016_020 Hb_001582_030 Hb_001582_030 Hb_000453_080--Hb_001582_030 Hb_000453_080--Hb_005000_270 Hb_005635_010 Hb_005635_010 Hb_000453_080--Hb_005635_010 Hb_002105_080 Hb_002105_080 Hb_000453_080--Hb_002105_080 Hb_001486_120 Hb_001486_120 Hb_000453_080--Hb_001486_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.0255 13.5663 4.812 12.1946 47.6095 146.303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.9873 11.7568 28.8817 15.8289 8.53337

CAGE analysis