Hb_000295_100

Information

Type -
Description -
Location Contig295: 113034-114461
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30848: 112986-114409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000295_100 0.0 - - -
2 Hb_006455_110 0.1071750306 - - bromodomain-containing protein, putative [Ricinus communis]
3 Hb_006455_080 0.1204176559 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
4 Hb_006455_090 0.1244561151 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
5 Hb_002960_050 0.127874474 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
6 Hb_012807_080 0.1369291155 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
7 Hb_005965_010 0.1409121654 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
8 Hb_000696_350 0.141520803 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
9 Hb_003711_040 0.143716523 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
10 Hb_012286_050 0.1459284933 - - PREDICTED: syntaxin-61 [Jatropha curcas]
11 Hb_171788_010 0.1489006887 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
12 Hb_000307_200 0.1515549211 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
13 Hb_000424_240 0.1591201517 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
14 Hb_000200_040 0.1635404685 - - -
15 Hb_025814_010 0.165665388 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
16 Hb_002783_060 0.1671533059 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
17 Hb_001722_020 0.1679846262 - - -
18 Hb_002092_090 0.1689968776 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
19 Hb_083043_010 0.1704928163 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
20 Hb_000045_070 0.1711240499 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000295_100 Hb_000295_100 Hb_006455_110 Hb_006455_110 Hb_000295_100--Hb_006455_110 Hb_006455_080 Hb_006455_080 Hb_000295_100--Hb_006455_080 Hb_006455_090 Hb_006455_090 Hb_000295_100--Hb_006455_090 Hb_002960_050 Hb_002960_050 Hb_000295_100--Hb_002960_050 Hb_012807_080 Hb_012807_080 Hb_000295_100--Hb_012807_080 Hb_005965_010 Hb_005965_010 Hb_000295_100--Hb_005965_010 Hb_006455_110--Hb_005965_010 Hb_006455_110--Hb_006455_090 Hb_006455_110--Hb_006455_080 Hb_006455_110--Hb_012807_080 Hb_012286_050 Hb_012286_050 Hb_006455_110--Hb_012286_050 Hb_006455_080--Hb_006455_090 Hb_000248_050 Hb_000248_050 Hb_006455_080--Hb_000248_050 Hb_003711_040 Hb_003711_040 Hb_006455_080--Hb_003711_040 Hb_000453_080 Hb_000453_080 Hb_006455_080--Hb_000453_080 Hb_006455_090--Hb_003711_040 Hb_006455_090--Hb_012286_050 Hb_000307_200 Hb_000307_200 Hb_006455_090--Hb_000307_200 Hb_020902_010 Hb_020902_010 Hb_006455_090--Hb_020902_010 Hb_000248_010 Hb_000248_010 Hb_002960_050--Hb_000248_010 Hb_002783_060 Hb_002783_060 Hb_002960_050--Hb_002783_060 Hb_002960_050--Hb_005965_010 Hb_073559_010 Hb_073559_010 Hb_002960_050--Hb_073559_010 Hb_106005_010 Hb_106005_010 Hb_002960_050--Hb_106005_010 Hb_001477_010 Hb_001477_010 Hb_012807_080--Hb_001477_010 Hb_012807_080--Hb_006455_090 Hb_002046_040 Hb_002046_040 Hb_012807_080--Hb_002046_040 Hb_003299_090 Hb_003299_090 Hb_012807_080--Hb_003299_090 Hb_012807_080--Hb_003711_040 Hb_073339_010 Hb_073339_010 Hb_005965_010--Hb_073339_010 Hb_005965_010--Hb_106005_010 Hb_005965_010--Hb_012807_080 Hb_005965_010--Hb_006455_080 Hb_005965_010--Hb_006455_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.27171 1.31571 0.459908 3.80076 7.67828 26.2231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.01448 3.99555 3.82362 4.3514 1.83847

CAGE analysis