Hb_002783_060

Information

Type -
Description -
Location Contig2783: 64251-64583
Sequence    

Annotation

kegg
ID rcu:RCOM_1598260
description hypothetical protein
nr
ID XP_012073779.1
description PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KL98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08198 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29037: 64022-64781
cDNA
(Sanger)
(ID:Location)		 018_D23.ab1: 64060-64779

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_060 0.0 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
2 Hb_000810_020 0.1173942424 - - -
3 Hb_002960_050 0.1283809807 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
4 Hb_006846_140 0.1309029141 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005085_030 0.1421876942 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
6 Hb_005731_140 0.1508723553 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
7 Hb_007124_010 0.1514256603 - - unnamed protein product [Coffea canephora]
8 Hb_002205_060 0.1563486767 - - -
9 Hb_005679_070 0.158881964 - - hypothetical protein M569_07741, partial [Genlisea aurea]
10 Hb_006663_090 0.1599846844 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
11 Hb_002482_060 0.1611903055 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
12 Hb_006487_060 0.1618316273 - - Defective in cullin neddylation protein, putative [Ricinus communis]
13 Hb_106005_010 0.1632413618 - - EG5651 [Manihot esculenta]
14 Hb_000176_120 0.16603666 - - seryl-tRNA synthetase, putative [Ricinus communis]
15 Hb_007763_060 0.1664977775 - - BnaA02g23510D [Brassica napus]
16 Hb_000295_100 0.1671533059 - - -
17 Hb_006252_010 0.1679291826 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
18 Hb_005965_010 0.1728236361 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
19 Hb_169170_010 0.1733121281 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
20 Hb_000696_350 0.1760185972 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_002783_060 Hb_002783_060 Hb_000810_020 Hb_000810_020 Hb_002783_060--Hb_000810_020 Hb_002960_050 Hb_002960_050 Hb_002783_060--Hb_002960_050 Hb_006846_140 Hb_006846_140 Hb_002783_060--Hb_006846_140 Hb_005085_030 Hb_005085_030 Hb_002783_060--Hb_005085_030 Hb_005731_140 Hb_005731_140 Hb_002783_060--Hb_005731_140 Hb_007124_010 Hb_007124_010 Hb_002783_060--Hb_007124_010 Hb_002482_060 Hb_002482_060 Hb_000810_020--Hb_002482_060 Hb_006198_090 Hb_006198_090 Hb_000810_020--Hb_006198_090 Hb_005679_070 Hb_005679_070 Hb_000810_020--Hb_005679_070 Hb_000810_020--Hb_005731_140 Hb_000810_020--Hb_005085_030 Hb_000248_010 Hb_000248_010 Hb_002960_050--Hb_000248_010 Hb_000295_100 Hb_000295_100 Hb_002960_050--Hb_000295_100 Hb_005965_010 Hb_005965_010 Hb_002960_050--Hb_005965_010 Hb_073559_010 Hb_073559_010 Hb_002960_050--Hb_073559_010 Hb_106005_010 Hb_106005_010 Hb_002960_050--Hb_106005_010 Hb_006846_140--Hb_000810_020 Hb_056199_010 Hb_056199_010 Hb_006846_140--Hb_056199_010 Hb_006846_140--Hb_005085_030 Hb_006846_140--Hb_002960_050 Hb_169170_010 Hb_169170_010 Hb_006846_140--Hb_169170_010 Hb_005085_030--Hb_005679_070 Hb_004060_030 Hb_004060_030 Hb_005085_030--Hb_004060_030 Hb_152554_010 Hb_152554_010 Hb_005085_030--Hb_152554_010 Hb_006663_090 Hb_006663_090 Hb_005085_030--Hb_006663_090 Hb_007188_020 Hb_007188_020 Hb_005085_030--Hb_007188_020 Hb_166480_010 Hb_166480_010 Hb_005085_030--Hb_166480_010 Hb_032531_060 Hb_032531_060 Hb_005731_140--Hb_032531_060 Hb_005731_140--Hb_002482_060 Hb_005731_140--Hb_106005_010 Hb_124141_010 Hb_124141_010 Hb_005731_140--Hb_124141_010 Hb_034579_010 Hb_034579_010 Hb_005731_140--Hb_034579_010 Hb_007124_010--Hb_005731_140 Hb_005305_060 Hb_005305_060 Hb_007124_010--Hb_005305_060 Hb_028639_050 Hb_028639_050 Hb_007124_010--Hb_028639_050 Hb_000329_770 Hb_000329_770 Hb_007124_010--Hb_000329_770 Hb_007124_010--Hb_006846_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.4717 14.8422 6.98952 156.181 99.9674 645.009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
153.475 91.9972 82.3233 70.7428 80.4852

CAGE analysis