Hb_006846_140

Information

Type -
Description -
Location Contig6846: 116339-117818
Sequence    

Annotation

kegg
ID rcu:RCOM_1503190
description hypothetical protein
nr
ID XP_002511076.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FI44
description Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana GN=SDHAF2 PE=1 SV=1
trembl
ID B9RA51
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1503190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54075: 112743-115615 , PASA_asmbl_54076: 116342-116827 , PASA_asmbl_54077: 117221-117498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002783_060 0.1309029141 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
3 Hb_000810_020 0.1555649157 - - -
4 Hb_056199_010 0.1677740874 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
5 Hb_005085_030 0.1709145823 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
6 Hb_002960_050 0.1750859687 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
7 Hb_169170_010 0.1789573688 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
8 Hb_000176_120 0.1806883414 - - seryl-tRNA synthetase, putative [Ricinus communis]
9 Hb_005054_070 0.1824657829 - - unnamed protein product [Vitis vinifera]
10 Hb_000161_120 0.1824755513 - - unnamed protein product [Vitis vinifera]
11 Hb_007124_010 0.182814306 - - unnamed protein product [Coffea canephora]
12 Hb_177103_010 0.1950163755 - - PREDICTED: histone H2AX [Elaeis guineensis]
13 Hb_003581_010 0.1959753089 - - hypothetical protein VITISV_004687 [Vitis vinifera]
14 Hb_005731_140 0.2006918744 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
15 Hb_000329_560 0.2032015789 - - conserved hypothetical protein [Ricinus communis]
16 Hb_068014_010 0.2058743093 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
17 Hb_006663_090 0.2075411212 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
18 Hb_000295_100 0.2078804125 - - -
19 Hb_005679_070 0.2082746878 - - hypothetical protein M569_07741, partial [Genlisea aurea]
20 Hb_136731_010 0.2092005848 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_006846_140 Hb_006846_140 Hb_002783_060 Hb_002783_060 Hb_006846_140--Hb_002783_060 Hb_000810_020 Hb_000810_020 Hb_006846_140--Hb_000810_020 Hb_056199_010 Hb_056199_010 Hb_006846_140--Hb_056199_010 Hb_005085_030 Hb_005085_030 Hb_006846_140--Hb_005085_030 Hb_002960_050 Hb_002960_050 Hb_006846_140--Hb_002960_050 Hb_169170_010 Hb_169170_010 Hb_006846_140--Hb_169170_010 Hb_002783_060--Hb_000810_020 Hb_002783_060--Hb_002960_050 Hb_002783_060--Hb_005085_030 Hb_005731_140 Hb_005731_140 Hb_002783_060--Hb_005731_140 Hb_007124_010 Hb_007124_010 Hb_002783_060--Hb_007124_010 Hb_002482_060 Hb_002482_060 Hb_000810_020--Hb_002482_060 Hb_006198_090 Hb_006198_090 Hb_000810_020--Hb_006198_090 Hb_005679_070 Hb_005679_070 Hb_000810_020--Hb_005679_070 Hb_000810_020--Hb_005731_140 Hb_000810_020--Hb_005085_030 Hb_000001_040 Hb_000001_040 Hb_056199_010--Hb_000001_040 Hb_005054_070 Hb_005054_070 Hb_056199_010--Hb_005054_070 Hb_000176_120 Hb_000176_120 Hb_056199_010--Hb_000176_120 Hb_007012_020 Hb_007012_020 Hb_056199_010--Hb_007012_020 Hb_136731_010 Hb_136731_010 Hb_056199_010--Hb_136731_010 Hb_005367_010 Hb_005367_010 Hb_056199_010--Hb_005367_010 Hb_005085_030--Hb_005679_070 Hb_004060_030 Hb_004060_030 Hb_005085_030--Hb_004060_030 Hb_152554_010 Hb_152554_010 Hb_005085_030--Hb_152554_010 Hb_006663_090 Hb_006663_090 Hb_005085_030--Hb_006663_090 Hb_007188_020 Hb_007188_020 Hb_005085_030--Hb_007188_020 Hb_166480_010 Hb_166480_010 Hb_005085_030--Hb_166480_010 Hb_000248_010 Hb_000248_010 Hb_002960_050--Hb_000248_010 Hb_000295_100 Hb_000295_100 Hb_002960_050--Hb_000295_100 Hb_005965_010 Hb_005965_010 Hb_002960_050--Hb_005965_010 Hb_073559_010 Hb_073559_010 Hb_002960_050--Hb_073559_010 Hb_106005_010 Hb_106005_010 Hb_002960_050--Hb_106005_010 Hb_177103_010 Hb_177103_010 Hb_169170_010--Hb_177103_010 Hb_068014_010 Hb_068014_010 Hb_169170_010--Hb_068014_010 Hb_169170_010--Hb_006198_090 Hb_005318_020 Hb_005318_020 Hb_169170_010--Hb_005318_020 Hb_007447_020 Hb_007447_020 Hb_169170_010--Hb_007447_020 Hb_007188_030 Hb_007188_030 Hb_169170_010--Hb_007188_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.312777 0 0.185657 0.807519 0.640928 3.86003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.832616 0.545073 0.183903 0.544887 0.405734

CAGE analysis