Hb_006198_090

Information

Type -
Description -
Location Contig6198: 54859-55092
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011218mg
description hypothetical protein
nr
ID XP_010547078.1
description PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
swissprot
ID O23429
description Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2
trembl
ID Q7X9C5
description Synptobrevin-related protein (Fragment) OS=Pyrus pyrifolia PE=2 SV=1
Gene Ontology
ID GO:0016021
description vesicle-associated membrane protein 726

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51373: 50529-55278
cDNA
(Sanger)
(ID:Location)		 027_C19.ab1: 51949-55278 , 045_G07.ab1: 50668-55160

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_090 0.0 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
2 Hb_003656_150 0.1166168014 - - -
3 Hb_001998_140 0.1181477798 - - -
4 Hb_007188_030 0.1197292189 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
5 Hb_002482_060 0.1324790479 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
6 Hb_177103_010 0.1327988381 - - PREDICTED: histone H2AX [Elaeis guineensis]
7 Hb_169170_010 0.1381555385 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
8 Hb_000810_020 0.1416597258 - - -
9 Hb_006995_010 0.1448013364 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
10 Hb_005679_070 0.1448783348 - - hypothetical protein M569_07741, partial [Genlisea aurea]
11 Hb_000120_190 0.1474352331 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
12 Hb_029142_020 0.15602109 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
13 Hb_005731_140 0.1572593462 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
14 Hb_003029_100 0.1580344891 - - -
15 Hb_010565_040 0.1602653348 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
16 Hb_000086_190 0.1647973733 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
17 Hb_002815_050 0.1673524918 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
18 Hb_001260_030 0.168350232 - - conserved hypothetical protein [Ricinus communis]
19 Hb_166480_010 0.1734543714 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
20 Hb_003030_040 0.1782049811 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_006198_090 Hb_006198_090 Hb_003656_150 Hb_003656_150 Hb_006198_090--Hb_003656_150 Hb_001998_140 Hb_001998_140 Hb_006198_090--Hb_001998_140 Hb_007188_030 Hb_007188_030 Hb_006198_090--Hb_007188_030 Hb_002482_060 Hb_002482_060 Hb_006198_090--Hb_002482_060 Hb_177103_010 Hb_177103_010 Hb_006198_090--Hb_177103_010 Hb_169170_010 Hb_169170_010 Hb_006198_090--Hb_169170_010 Hb_006995_010 Hb_006995_010 Hb_003656_150--Hb_006995_010 Hb_003656_150--Hb_007188_030 Hb_012675_080 Hb_012675_080 Hb_003656_150--Hb_012675_080 Hb_003029_100 Hb_003029_100 Hb_003656_150--Hb_003029_100 Hb_003030_040 Hb_003030_040 Hb_003656_150--Hb_003030_040 Hb_005679_070 Hb_005679_070 Hb_001998_140--Hb_005679_070 Hb_001998_140--Hb_007188_030 Hb_001998_140--Hb_002482_060 Hb_026228_010 Hb_026228_010 Hb_001998_140--Hb_026228_010 Hb_010565_040 Hb_010565_040 Hb_001998_140--Hb_010565_040 Hb_002815_050 Hb_002815_050 Hb_007188_030--Hb_002815_050 Hb_007188_030--Hb_177103_010 Hb_007188_030--Hb_003030_040 Hb_007188_030--Hb_005679_070 Hb_000120_190 Hb_000120_190 Hb_002482_060--Hb_000120_190 Hb_005731_140 Hb_005731_140 Hb_002482_060--Hb_005731_140 Hb_166480_010 Hb_166480_010 Hb_002482_060--Hb_166480_010 Hb_106005_010 Hb_106005_010 Hb_002482_060--Hb_106005_010 Hb_007763_060 Hb_007763_060 Hb_002482_060--Hb_007763_060 Hb_177103_010--Hb_169170_010 Hb_177103_010--Hb_003656_150 Hb_177103_010--Hb_005679_070 Hb_068014_010 Hb_068014_010 Hb_177103_010--Hb_068014_010 Hb_169170_010--Hb_068014_010 Hb_005318_020 Hb_005318_020 Hb_169170_010--Hb_005318_020 Hb_007447_020 Hb_007447_020 Hb_169170_010--Hb_007447_020 Hb_169170_010--Hb_007188_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
105.031 80.8832 31.8317 1474.58 107.452 3801.99
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
640.077 486.506 557.726 343.051 231.647

CAGE analysis