Hb_007447_020

Information

Type -
Description -
Location Contig7447: 69518-69905
Sequence    

Annotation

kegg
ID mdm:103402188
description CBS domain-containing protein CBSCBSPB3-like
nr
ID KDO52200.1
description hypothetical protein CISIN_1g038065mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067EEB1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038065mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description cbs domain-containing protein cbscbspb3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56668: 69579-81179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007447_020 0.0 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
2 Hb_031866_050 0.1236648413 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
3 Hb_000683_090 0.1310333951 - - stress enhanced protein [Medicago truncatula]
4 Hb_005318_020 0.1393805022 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
5 Hb_169170_010 0.1473978227 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
6 Hb_122567_020 0.1752838217 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
7 Hb_079978_010 0.1833666544 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
8 Hb_007083_050 0.1854451567 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
9 Hb_005933_010 0.1857851171 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
10 Hb_008096_020 0.1876245484 - - -
11 Hb_000084_130 0.1910945798 - - -
12 Hb_006995_010 0.1934060953 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
13 Hb_003656_150 0.2001467127 - - -
14 Hb_001222_040 0.2005473776 - - -
15 Hb_003030_040 0.2007602888 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
16 Hb_001231_070 0.2043609126 - - -
17 Hb_177103_010 0.2056155547 - - PREDICTED: histone H2AX [Elaeis guineensis]
18 Hb_006198_090 0.2075272758 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
19 Hb_007188_030 0.2089587534 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
20 Hb_001385_080 0.2112025139 - - -

Gene co-expression network

sample Hb_007447_020 Hb_007447_020 Hb_031866_050 Hb_031866_050 Hb_007447_020--Hb_031866_050 Hb_000683_090 Hb_000683_090 Hb_007447_020--Hb_000683_090 Hb_005318_020 Hb_005318_020 Hb_007447_020--Hb_005318_020 Hb_169170_010 Hb_169170_010 Hb_007447_020--Hb_169170_010 Hb_122567_020 Hb_122567_020 Hb_007447_020--Hb_122567_020 Hb_079978_010 Hb_079978_010 Hb_007447_020--Hb_079978_010 Hb_003030_040 Hb_003030_040 Hb_031866_050--Hb_003030_040 Hb_003656_150 Hb_003656_150 Hb_031866_050--Hb_003656_150 Hb_007188_030 Hb_007188_030 Hb_031866_050--Hb_007188_030 Hb_031866_050--Hb_000683_090 Hb_177103_010 Hb_177103_010 Hb_031866_050--Hb_177103_010 Hb_000683_090--Hb_005318_020 Hb_008096_020 Hb_008096_020 Hb_000683_090--Hb_008096_020 Hb_001222_040 Hb_001222_040 Hb_000683_090--Hb_001222_040 Hb_000683_090--Hb_169170_010 Hb_005318_020--Hb_079978_010 Hb_007083_050 Hb_007083_050 Hb_005318_020--Hb_007083_050 Hb_005318_020--Hb_169170_010 Hb_000084_130 Hb_000084_130 Hb_005318_020--Hb_000084_130 Hb_169170_010--Hb_177103_010 Hb_068014_010 Hb_068014_010 Hb_169170_010--Hb_068014_010 Hb_006198_090 Hb_006198_090 Hb_169170_010--Hb_006198_090 Hb_169170_010--Hb_007188_030 Hb_005933_010 Hb_005933_010 Hb_122567_020--Hb_005933_010 Hb_000805_300 Hb_000805_300 Hb_122567_020--Hb_000805_300 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_059952_010 Hb_059952_010 Hb_122567_020--Hb_059952_010 Hb_001385_080 Hb_001385_080 Hb_122567_020--Hb_001385_080 Hb_001235_060 Hb_001235_060 Hb_122567_020--Hb_001235_060 Hb_079978_010--Hb_007083_050 Hb_079978_010--Hb_122567_020 Hb_101151_030 Hb_101151_030 Hb_079978_010--Hb_101151_030 Hb_079978_010--Hb_000805_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.48858 1.28273 2.06103 23.3874 5.94736 74.4664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.49375 3.92691 5.23863 1.55739 4.38025

CAGE analysis