Hb_001222_040

Information

Type -
Description -
Location Contig1222: 176080-177680
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001222_040 0.0 - - -
2 Hb_000683_090 0.1703285055 - - stress enhanced protein [Medicago truncatula]
3 Hb_169170_010 0.1935955381 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
4 Hb_006995_010 0.1943846722 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
5 Hb_000082_020 0.1963853454 - - -
6 Hb_001231_070 0.1980217916 - - -
7 Hb_008096_020 0.1989211696 - - -
8 Hb_007447_020 0.2005473776 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
9 Hb_003656_150 0.2024042283 - - -
10 Hb_007083_020 0.2041162758 - - hypothetical protein F775_15403 [Aegilops tauschii]
11 Hb_005318_020 0.2087215212 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
12 Hb_000340_330 0.2175953748 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
13 Hb_003030_040 0.2200427448 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
14 Hb_005107_020 0.22267276 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
15 Hb_183522_010 0.2236619981 - - Far upstream element-binding protein, putative [Ricinus communis]
16 Hb_068014_010 0.2262520003 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
17 Hb_006198_090 0.2271917846 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
18 Hb_114079_010 0.2272992068 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
19 Hb_003371_170 0.2298676385 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000789_150 0.2312665932 - - Acid phosphatase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001222_040 Hb_001222_040 Hb_000683_090 Hb_000683_090 Hb_001222_040--Hb_000683_090 Hb_169170_010 Hb_169170_010 Hb_001222_040--Hb_169170_010 Hb_006995_010 Hb_006995_010 Hb_001222_040--Hb_006995_010 Hb_000082_020 Hb_000082_020 Hb_001222_040--Hb_000082_020 Hb_001231_070 Hb_001231_070 Hb_001222_040--Hb_001231_070 Hb_008096_020 Hb_008096_020 Hb_001222_040--Hb_008096_020 Hb_007447_020 Hb_007447_020 Hb_000683_090--Hb_007447_020 Hb_005318_020 Hb_005318_020 Hb_000683_090--Hb_005318_020 Hb_000683_090--Hb_008096_020 Hb_031866_050 Hb_031866_050 Hb_000683_090--Hb_031866_050 Hb_000683_090--Hb_169170_010 Hb_177103_010 Hb_177103_010 Hb_169170_010--Hb_177103_010 Hb_068014_010 Hb_068014_010 Hb_169170_010--Hb_068014_010 Hb_006198_090 Hb_006198_090 Hb_169170_010--Hb_006198_090 Hb_169170_010--Hb_005318_020 Hb_169170_010--Hb_007447_020 Hb_007188_030 Hb_007188_030 Hb_169170_010--Hb_007188_030 Hb_003656_150 Hb_003656_150 Hb_006995_010--Hb_003656_150 Hb_000289_080 Hb_000289_080 Hb_006995_010--Hb_000289_080 Hb_003029_100 Hb_003029_100 Hb_006995_010--Hb_003029_100 Hb_012675_080 Hb_012675_080 Hb_006995_010--Hb_012675_080 Hb_000086_190 Hb_000086_190 Hb_006995_010--Hb_000086_190 Hb_006995_010--Hb_006198_090 Hb_041025_010 Hb_041025_010 Hb_000082_020--Hb_041025_010 Hb_114079_010 Hb_114079_010 Hb_000082_020--Hb_114079_010 Hb_046120_010 Hb_046120_010 Hb_000082_020--Hb_046120_010 Hb_007083_020 Hb_007083_020 Hb_000082_020--Hb_007083_020 Hb_183522_010 Hb_183522_010 Hb_000082_020--Hb_183522_010 Hb_106415_010 Hb_106415_010 Hb_000082_020--Hb_106415_010 Hb_001231_070--Hb_006995_010 Hb_001231_070--Hb_068014_010 Hb_001231_070--Hb_169170_010 Hb_001231_070--Hb_003656_150 Hb_001231_070--Hb_000683_090 Hb_021943_070 Hb_021943_070 Hb_008096_020--Hb_021943_070 Hb_002450_130 Hb_002450_130 Hb_008096_020--Hb_002450_130 Hb_002972_060 Hb_002972_060 Hb_008096_020--Hb_002972_060 Hb_000084_130 Hb_000084_130 Hb_008096_020--Hb_000084_130 Hb_008096_020--Hb_003656_150 Hb_008096_020--Hb_006995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0652109 0.0563083 0.310076 1.76781 0.188621 3.4239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.153319 0.240866 0.400978 0.252419 0

CAGE analysis