Hb_183522_010

Information

Type -
Description -
Location Contig183522: 175-1278
Sequence    

Annotation

kegg
ID rcu:RCOM_0350300
description Far upstream element-binding protein, putative (EC:3.1.2.15)
nr
ID XP_002532622.1
description Far upstream element-binding protein, putative [Ricinus communis]
swissprot
ID Q9LZ82
description Protein BTR1 OS=Arabidopsis thaliana GN=BTR1 PE=1 SV=1
trembl
ID B9T303
description Far upstream element-binding protein, putative OS=Ricinus communis GN=RCOM_0350300 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna-binding protein nova-2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183522_010 0.0 - - Far upstream element-binding protein, putative [Ricinus communis]
2 Hb_007083_020 0.1249472777 - - hypothetical protein F775_15403 [Aegilops tauschii]
3 Hb_106415_010 0.1440654648 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
4 Hb_114079_010 0.152723439 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
5 Hb_010964_020 0.1568856685 - - RNA helicase [Arabidopsis thaliana]
6 Hb_000053_030 0.1585600851 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
7 Hb_005107_020 0.1615964908 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
8 Hb_009083_030 0.1665294926 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
9 Hb_033385_010 0.1675831213 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
10 Hb_000082_020 0.1705124102 - - -
11 Hb_003030_040 0.1705259734 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
12 Hb_006162_020 0.1708976555 - - -
13 Hb_041025_010 0.1713311376 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
14 Hb_068014_010 0.1722111475 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
15 Hb_003371_170 0.1736692949 - - conserved hypothetical protein [Ricinus communis]
16 Hb_013394_100 0.1737783329 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
17 Hb_108227_010 0.1759624049 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
18 Hb_000034_090 0.1762443684 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
19 Hb_002815_050 0.1804960229 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
20 Hb_000317_140 0.1819428463 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_183522_010 Hb_183522_010 Hb_007083_020 Hb_007083_020 Hb_183522_010--Hb_007083_020 Hb_106415_010 Hb_106415_010 Hb_183522_010--Hb_106415_010 Hb_114079_010 Hb_114079_010 Hb_183522_010--Hb_114079_010 Hb_010964_020 Hb_010964_020 Hb_183522_010--Hb_010964_020 Hb_000053_030 Hb_000053_030 Hb_183522_010--Hb_000053_030 Hb_005107_020 Hb_005107_020 Hb_183522_010--Hb_005107_020 Hb_068014_010 Hb_068014_010 Hb_007083_020--Hb_068014_010 Hb_007083_020--Hb_106415_010 Hb_003371_170 Hb_003371_170 Hb_007083_020--Hb_003371_170 Hb_019053_010 Hb_019053_010 Hb_007083_020--Hb_019053_010 Hb_005542_090 Hb_005542_090 Hb_007083_020--Hb_005542_090 Hb_099878_050 Hb_099878_050 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_106415_010--Hb_019053_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030 Hb_000082_020 Hb_000082_020 Hb_114079_010--Hb_000082_020 Hb_041025_010 Hb_041025_010 Hb_114079_010--Hb_041025_010 Hb_003030_040 Hb_003030_040 Hb_114079_010--Hb_003030_040 Hb_025905_020 Hb_025905_020 Hb_114079_010--Hb_025905_020 Hb_114079_010--Hb_010964_020 Hb_178620_010 Hb_178620_010 Hb_010964_020--Hb_178620_010 Hb_001623_300 Hb_001623_300 Hb_010964_020--Hb_001623_300 Hb_001623_290 Hb_001623_290 Hb_010964_020--Hb_001623_290 Hb_068569_010 Hb_068569_010 Hb_010964_020--Hb_068569_010 Hb_002192_090 Hb_002192_090 Hb_010964_020--Hb_002192_090 Hb_010964_020--Hb_025905_020 Hb_004466_060 Hb_004466_060 Hb_000053_030--Hb_004466_060 Hb_013358_090 Hb_013358_090 Hb_000053_030--Hb_013358_090 Hb_000053_030--Hb_002192_090 Hb_088163_010 Hb_088163_010 Hb_000053_030--Hb_088163_010 Hb_000053_030--Hb_106415_010 Hb_000053_030--Hb_099878_050 Hb_000034_090 Hb_000034_090 Hb_005107_020--Hb_000034_090 Hb_006162_020 Hb_006162_020 Hb_005107_020--Hb_006162_020 Hb_006794_010 Hb_006794_010 Hb_005107_020--Hb_006794_010 Hb_012675_080 Hb_012675_080 Hb_005107_020--Hb_012675_080 Hb_011200_010 Hb_011200_010 Hb_005107_020--Hb_011200_010 Hb_005107_020--Hb_003030_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.23013 5.14763 10.4945 82.9084 9.36126 77.2949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.07 8.47812 3.50065 12.5573 3.7807

CAGE analysis