Hb_004466_060

Information

Type -
Description -
Location Contig4466: 89121-89579
Sequence    

Annotation

kegg
ID pop:POPTR_0009s12110g
description POPTRDRAFT_201266; hypothetical protein
nr
ID XP_006379251.1
description hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
swissprot
ID O48671
description Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=1 SV=2
trembl
ID A9PBA9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s12110g PE=2 SV=1
Gene Ontology
ID GO:0016021
description protein rer1a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43073: 74778-91878
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004466_060 0.0 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
2 Hb_000053_030 0.113121856 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
3 Hb_100137_010 0.123102445 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
4 Hb_000168_010 0.1280779919 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
5 Hb_089202_010 0.1317909232 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
6 Hb_002611_030 0.1345969403 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
7 Hb_002562_110 0.1357016676 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
8 Hb_009529_040 0.1430403057 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
9 Hb_001747_030 0.1446901544 - - hypothetical protein F383_08210 [Gossypium arboreum]
10 Hb_011942_060 0.1459222924 - - hypothetical protein CISIN_1g028965mg [Citrus sinensis]
11 Hb_000074_060 0.1480484981 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
12 Hb_000825_030 0.1485490224 - - zinc binding dehydrogenase, putative [Ricinus communis]
13 Hb_099116_010 0.1498803754 - - conserved hypothetical protein [Ricinus communis]
14 Hb_088163_010 0.1536426145 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
15 Hb_005170_010 0.155401854 - - -
16 Hb_075764_010 0.1560451364 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
17 Hb_013358_090 0.1587155547 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
18 Hb_002192_090 0.1588878503 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
19 Hb_000004_010 0.1589653169 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
20 Hb_106415_010 0.1616903066 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004466_060 Hb_004466_060 Hb_000053_030 Hb_000053_030 Hb_004466_060--Hb_000053_030 Hb_100137_010 Hb_100137_010 Hb_004466_060--Hb_100137_010 Hb_000168_010 Hb_000168_010 Hb_004466_060--Hb_000168_010 Hb_089202_010 Hb_089202_010 Hb_004466_060--Hb_089202_010 Hb_002611_030 Hb_002611_030 Hb_004466_060--Hb_002611_030 Hb_002562_110 Hb_002562_110 Hb_004466_060--Hb_002562_110 Hb_013358_090 Hb_013358_090 Hb_000053_030--Hb_013358_090 Hb_002192_090 Hb_002192_090 Hb_000053_030--Hb_002192_090 Hb_088163_010 Hb_088163_010 Hb_000053_030--Hb_088163_010 Hb_106415_010 Hb_106415_010 Hb_000053_030--Hb_106415_010 Hb_099878_050 Hb_099878_050 Hb_000053_030--Hb_099878_050 Hb_048702_010 Hb_048702_010 Hb_100137_010--Hb_048702_010 Hb_100137_010--Hb_002611_030 Hb_000077_290 Hb_000077_290 Hb_100137_010--Hb_000077_290 Hb_122636_010 Hb_122636_010 Hb_100137_010--Hb_122636_010 Hb_001217_010 Hb_001217_010 Hb_100137_010--Hb_001217_010 Hb_000215_310 Hb_000215_310 Hb_000168_010--Hb_000215_310 Hb_099116_010 Hb_099116_010 Hb_000168_010--Hb_099116_010 Hb_004040_030 Hb_004040_030 Hb_000168_010--Hb_004040_030 Hb_000586_030 Hb_000586_030 Hb_000168_010--Hb_000586_030 Hb_002611_020 Hb_002611_020 Hb_000168_010--Hb_002611_020 Hb_000342_160 Hb_000342_160 Hb_089202_010--Hb_000342_160 Hb_000481_050 Hb_000481_050 Hb_089202_010--Hb_000481_050 Hb_003371_170 Hb_003371_170 Hb_089202_010--Hb_003371_170 Hb_089202_010--Hb_000168_010 Hb_000125_020 Hb_000125_020 Hb_089202_010--Hb_000125_020 Hb_017014_010 Hb_017014_010 Hb_002611_030--Hb_017014_010 Hb_002611_030--Hb_048702_010 Hb_009083_030 Hb_009083_030 Hb_002611_030--Hb_009083_030 Hb_010003_010 Hb_010003_010 Hb_002611_030--Hb_010003_010 Hb_082006_010 Hb_082006_010 Hb_002562_110--Hb_082006_010 Hb_000635_070 Hb_000635_070 Hb_002562_110--Hb_000635_070 Hb_002078_260 Hb_002078_260 Hb_002562_110--Hb_002078_260 Hb_009270_030 Hb_009270_030 Hb_002562_110--Hb_009270_030 Hb_004669_030 Hb_004669_030 Hb_002562_110--Hb_004669_030 Hb_000016_060 Hb_000016_060 Hb_002562_110--Hb_000016_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6464 15.8489 21.7261 183.249 29.6683 114.223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.3392 30.4754 31.4265 34.5417 38.7543

CAGE analysis