Hb_000215_310

Information

Type -
Description -
Location Contig215: 242518-243122
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_310 0.0 - - -
2 Hb_000168_010 0.1103375396 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
3 Hb_002477_050 0.1362690413 - - unnamed protein product [Coffea canephora]
4 Hb_000603_070 0.140047273 - - -
5 Hb_038237_010 0.1499114099 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
6 Hb_001195_160 0.1507699588 - - -
7 Hb_090158_010 0.1642563466 - - hypothetical protein RCOM_1968400 [Ricinus communis]
8 Hb_088163_010 0.1647119982 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
9 Hb_004466_060 0.1710859967 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
10 Hb_004709_020 0.1754490588 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
11 Hb_099878_050 0.1766739161 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
12 Hb_000155_110 0.1780370798 - - Auxin response factor, putative [Ricinus communis]
13 Hb_013358_090 0.1813070702 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
14 Hb_143629_130 0.1821837478 - - unnamed protein product [Coffea canephora]
15 Hb_002611_020 0.1851603845 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
16 Hb_099116_010 0.1861004764 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011942_060 0.186363864 - - hypothetical protein CISIN_1g028965mg [Citrus sinensis]
18 Hb_000679_190 0.1879362436 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
19 Hb_004040_030 0.1889360937 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
20 Hb_006636_010 0.1894116803 - - PREDICTED: uncharacterized protein LOC105637987 [Jatropha curcas]

Gene co-expression network

sample Hb_000215_310 Hb_000215_310 Hb_000168_010 Hb_000168_010 Hb_000215_310--Hb_000168_010 Hb_002477_050 Hb_002477_050 Hb_000215_310--Hb_002477_050 Hb_000603_070 Hb_000603_070 Hb_000215_310--Hb_000603_070 Hb_038237_010 Hb_038237_010 Hb_000215_310--Hb_038237_010 Hb_001195_160 Hb_001195_160 Hb_000215_310--Hb_001195_160 Hb_090158_010 Hb_090158_010 Hb_000215_310--Hb_090158_010 Hb_099116_010 Hb_099116_010 Hb_000168_010--Hb_099116_010 Hb_004040_030 Hb_004040_030 Hb_000168_010--Hb_004040_030 Hb_004466_060 Hb_004466_060 Hb_000168_010--Hb_004466_060 Hb_000586_030 Hb_000586_030 Hb_000168_010--Hb_000586_030 Hb_002611_020 Hb_002611_020 Hb_000168_010--Hb_002611_020 Hb_143629_130 Hb_143629_130 Hb_002477_050--Hb_143629_130 Hb_002477_050--Hb_099116_010 Hb_002477_050--Hb_001195_160 Hb_004709_020 Hb_004709_020 Hb_002477_050--Hb_004709_020 Hb_006629_010 Hb_006629_010 Hb_002477_050--Hb_006629_010 Hb_000016_060 Hb_000016_060 Hb_000603_070--Hb_000016_060 Hb_148130_020 Hb_148130_020 Hb_000603_070--Hb_148130_020 Hb_000125_020 Hb_000125_020 Hb_000603_070--Hb_000125_020 Hb_000603_070--Hb_000168_010 Hb_007943_200 Hb_007943_200 Hb_000603_070--Hb_007943_200 Hb_152554_010 Hb_152554_010 Hb_038237_010--Hb_152554_010 Hb_000825_030 Hb_000825_030 Hb_038237_010--Hb_000825_030 Hb_076875_020 Hb_076875_020 Hb_038237_010--Hb_076875_020 Hb_129672_010 Hb_129672_010 Hb_038237_010--Hb_129672_010 Hb_005527_020 Hb_005527_020 Hb_038237_010--Hb_005527_020 Hb_000676_080 Hb_000676_080 Hb_038237_010--Hb_000676_080 Hb_001195_160--Hb_038237_010 Hb_001195_160--Hb_143629_130 Hb_001195_160--Hb_090158_010 Hb_131967_010 Hb_131967_010 Hb_001195_160--Hb_131967_010 Hb_075764_010 Hb_075764_010 Hb_090158_010--Hb_075764_010 Hb_099878_050 Hb_099878_050 Hb_090158_010--Hb_099878_050 Hb_085972_010 Hb_085972_010 Hb_090158_010--Hb_085972_010 Hb_088163_010 Hb_088163_010 Hb_090158_010--Hb_088163_010 Hb_146675_010 Hb_146675_010 Hb_090158_010--Hb_146675_010 Hb_090158_010--Hb_129672_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26731 4.44531 3.33217 32.6668 3.45756 24.458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.3228 5.15297 4.88256 19.6711 4.39543

CAGE analysis