Hb_001195_160

Information

Type -
Description -
Location Contig1195: 79697-80267
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05788: 77038-80206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_160 0.0 - - -
2 Hb_002477_050 0.1505773187 - - unnamed protein product [Coffea canephora]
3 Hb_000215_310 0.1507699588 - - -
4 Hb_038237_010 0.1681763425 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
5 Hb_143629_130 0.1724795181 - - unnamed protein product [Coffea canephora]
6 Hb_090158_010 0.1737656521 - - hypothetical protein RCOM_1968400 [Ricinus communis]
7 Hb_131967_010 0.1765104062 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
8 Hb_000603_070 0.1777589522 - - -
9 Hb_075764_010 0.1785209376 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
10 Hb_007333_040 0.1845884013 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
11 Hb_000168_010 0.188265184 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
12 Hb_088163_010 0.188448834 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
13 Hb_099878_050 0.1924774836 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
14 Hb_002611_020 0.1934330079 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
15 Hb_106415_010 0.1942070684 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
16 Hb_006629_010 0.1972719474 - - Glutathione S-transferase 2 isoform 3 [Theobroma cacao]
17 Hb_000074_060 0.1996493989 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
18 Hb_000001_190 0.1996939645 - - hypothetical protein CISIN_1g0082522mg, partial [Citrus sinensis]
19 Hb_002110_040 0.1997236105 - - hypothetical protein AMTR_s00135p00074190 [Amborella trichopoda]
20 Hb_001247_300 0.1999924425 - - hypothetical protein JCGZ_23167 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_160 Hb_001195_160 Hb_002477_050 Hb_002477_050 Hb_001195_160--Hb_002477_050 Hb_000215_310 Hb_000215_310 Hb_001195_160--Hb_000215_310 Hb_038237_010 Hb_038237_010 Hb_001195_160--Hb_038237_010 Hb_143629_130 Hb_143629_130 Hb_001195_160--Hb_143629_130 Hb_090158_010 Hb_090158_010 Hb_001195_160--Hb_090158_010 Hb_131967_010 Hb_131967_010 Hb_001195_160--Hb_131967_010 Hb_002477_050--Hb_000215_310 Hb_002477_050--Hb_143629_130 Hb_099116_010 Hb_099116_010 Hb_002477_050--Hb_099116_010 Hb_004709_020 Hb_004709_020 Hb_002477_050--Hb_004709_020 Hb_006629_010 Hb_006629_010 Hb_002477_050--Hb_006629_010 Hb_000168_010 Hb_000168_010 Hb_000215_310--Hb_000168_010 Hb_000603_070 Hb_000603_070 Hb_000215_310--Hb_000603_070 Hb_000215_310--Hb_038237_010 Hb_000215_310--Hb_090158_010 Hb_152554_010 Hb_152554_010 Hb_038237_010--Hb_152554_010 Hb_000825_030 Hb_000825_030 Hb_038237_010--Hb_000825_030 Hb_076875_020 Hb_076875_020 Hb_038237_010--Hb_076875_020 Hb_129672_010 Hb_129672_010 Hb_038237_010--Hb_129672_010 Hb_005527_020 Hb_005527_020 Hb_038237_010--Hb_005527_020 Hb_000676_080 Hb_000676_080 Hb_038237_010--Hb_000676_080 Hb_002414_060 Hb_002414_060 Hb_143629_130--Hb_002414_060 Hb_007558_100 Hb_007558_100 Hb_143629_130--Hb_007558_100 Hb_000035_330 Hb_000035_330 Hb_143629_130--Hb_000035_330 Hb_003055_040 Hb_003055_040 Hb_143629_130--Hb_003055_040 Hb_002686_310 Hb_002686_310 Hb_143629_130--Hb_002686_310 Hb_004317_060 Hb_004317_060 Hb_143629_130--Hb_004317_060 Hb_075764_010 Hb_075764_010 Hb_090158_010--Hb_075764_010 Hb_099878_050 Hb_099878_050 Hb_090158_010--Hb_099878_050 Hb_085972_010 Hb_085972_010 Hb_090158_010--Hb_085972_010 Hb_088163_010 Hb_088163_010 Hb_090158_010--Hb_088163_010 Hb_146675_010 Hb_146675_010 Hb_090158_010--Hb_146675_010 Hb_090158_010--Hb_129672_010 Hb_002148_020 Hb_002148_020 Hb_131967_010--Hb_002148_020 Hb_000001_190 Hb_000001_190 Hb_131967_010--Hb_000001_190 Hb_005754_010 Hb_005754_010 Hb_131967_010--Hb_005754_010 Hb_003464_080 Hb_003464_080 Hb_131967_010--Hb_003464_080 Hb_000530_010 Hb_000530_010 Hb_131967_010--Hb_000530_010 Hb_001769_080 Hb_001769_080 Hb_131967_010--Hb_001769_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.37608 0.785506 0.272584 3.24333 0.988921 2.94777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.634621 1.12159 0.206475 2.56589 0.454836

CAGE analysis