Hb_000001_190

Information

Type -
Description -
Location Contig1: 341052-348055
Sequence    

Annotation

kegg
ID tcc:TCM_025063
description FAD-linked oxidases family protein isoform 1
nr
ID KDO70744.1
description hypothetical protein CISIN_1g0082522mg, partial [Citrus sinensis]
swissprot
ID Q94AX4
description D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis thaliana GN=DLD PE=1 SV=1
trembl
ID A0A067FTQ3
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0082522mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description d-lactate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00131: 341086-341445 , PASA_asmbl_00133: 345587-346523 , PASA_asmbl_00135: 347772-347907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_190 0.0 - - hypothetical protein CISIN_1g0082522mg, partial [Citrus sinensis]
2 Hb_000200_120 0.1100702352 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]
3 Hb_002217_030 0.1110293981 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
4 Hb_000692_160 0.1117776606 - - Transportin 1 isoform 1 [Theobroma cacao]
5 Hb_003464_080 0.1154761708 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
6 Hb_000302_310 0.1162470253 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
7 Hb_099878_030 0.1170324729 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
8 Hb_001860_030 0.1174038241 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
9 Hb_179306_020 0.117706243 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
10 Hb_002686_310 0.1206886155 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
11 Hb_000981_030 0.1224026838 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
12 Hb_001258_110 0.122409369 - - transporter, putative [Ricinus communis]
13 Hb_033501_010 0.1237954335 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
14 Hb_000109_170 0.1238472041 - - PREDICTED: uncharacterized protein LOC105649868 isoform X1 [Jatropha curcas]
15 Hb_003363_080 0.1257107024 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
16 Hb_000721_040 0.1282097171 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
17 Hb_002681_090 0.1295027561 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
18 Hb_003055_040 0.1296686156 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
19 Hb_005081_020 0.130072836 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
20 Hb_002889_030 0.1304913723 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]

Gene co-expression network

sample Hb_000001_190 Hb_000001_190 Hb_000200_120 Hb_000200_120 Hb_000001_190--Hb_000200_120 Hb_002217_030 Hb_002217_030 Hb_000001_190--Hb_002217_030 Hb_000692_160 Hb_000692_160 Hb_000001_190--Hb_000692_160 Hb_003464_080 Hb_003464_080 Hb_000001_190--Hb_003464_080 Hb_000302_310 Hb_000302_310 Hb_000001_190--Hb_000302_310 Hb_099878_030 Hb_099878_030 Hb_000001_190--Hb_099878_030 Hb_000200_120--Hb_002217_030 Hb_000200_120--Hb_003464_080 Hb_001178_070 Hb_001178_070 Hb_000200_120--Hb_001178_070 Hb_000116_410 Hb_000116_410 Hb_000200_120--Hb_000116_410 Hb_001860_030 Hb_001860_030 Hb_000200_120--Hb_001860_030 Hb_143629_110 Hb_143629_110 Hb_000200_120--Hb_143629_110 Hb_002217_030--Hb_003464_080 Hb_000182_040 Hb_000182_040 Hb_002217_030--Hb_000182_040 Hb_001232_010 Hb_001232_010 Hb_002217_030--Hb_001232_010 Hb_002217_030--Hb_001860_030 Hb_001235_140 Hb_001235_140 Hb_002217_030--Hb_001235_140 Hb_005081_020 Hb_005081_020 Hb_000692_160--Hb_005081_020 Hb_003906_170 Hb_003906_170 Hb_000692_160--Hb_003906_170 Hb_083799_010 Hb_083799_010 Hb_000692_160--Hb_083799_010 Hb_001009_080 Hb_001009_080 Hb_000692_160--Hb_001009_080 Hb_075315_010 Hb_075315_010 Hb_000692_160--Hb_075315_010 Hb_002272_170 Hb_002272_170 Hb_000692_160--Hb_002272_170 Hb_000089_120 Hb_000089_120 Hb_003464_080--Hb_000089_120 Hb_003464_080--Hb_143629_110 Hb_116349_070 Hb_116349_070 Hb_003464_080--Hb_116349_070 Hb_001635_090 Hb_001635_090 Hb_003464_080--Hb_001635_090 Hb_001214_060 Hb_001214_060 Hb_000302_310--Hb_001214_060 Hb_002681_090 Hb_002681_090 Hb_000302_310--Hb_002681_090 Hb_000302_310--Hb_001860_030 Hb_000035_470 Hb_000035_470 Hb_000302_310--Hb_000035_470 Hb_004319_080 Hb_004319_080 Hb_000302_310--Hb_004319_080 Hb_000163_220 Hb_000163_220 Hb_000302_310--Hb_000163_220 Hb_003940_040 Hb_003940_040 Hb_099878_030--Hb_003940_040 Hb_000140_280 Hb_000140_280 Hb_099878_030--Hb_000140_280 Hb_000159_090 Hb_000159_090 Hb_099878_030--Hb_000159_090 Hb_000429_150 Hb_000429_150 Hb_099878_030--Hb_000429_150 Hb_007638_030 Hb_007638_030 Hb_099878_030--Hb_007638_030 Hb_162603_010 Hb_162603_010 Hb_099878_030--Hb_162603_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.62477 0.703245 0.663673 1.36301 0.769105 1.51934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.827377 0.562104 0.386454 1.92955 0.491488

CAGE analysis