Hb_000140_280

Information

Type -
Description -
Location Contig140: 261832-268281
Sequence    

Annotation

kegg
ID pda:103709009
description reticulon-like protein B2
nr
ID KJB06453.1
description hypothetical protein B456_001G157900 [Gossypium raimondii]
swissprot
ID O82352
description Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1
trembl
ID A0A0D2N2G0
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G157900 PE=4 SV=1
Gene Ontology
ID GO:0005789
description reticulon-like protein b5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10846: 261894-268083 , PASA_asmbl_10847: 262002-268083
cDNA
(Sanger)
(ID:Location)		 031_L19.ab1: 261894-262894

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_280 0.0 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
2 Hb_007638_030 0.0557517222 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
3 Hb_000429_150 0.0621946187 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
4 Hb_000159_090 0.0636508295 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
5 Hb_010964_040 0.0696280375 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
6 Hb_000392_190 0.0743412345 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
7 Hb_099878_030 0.0779808802 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
8 Hb_012322_010 0.0807253917 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
9 Hb_000069_210 0.0841411562 - - PREDICTED: exportin-2 [Jatropha curcas]
10 Hb_002289_080 0.0856857241 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
11 Hb_000111_320 0.0895097094 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
12 Hb_002150_040 0.0899490558 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
13 Hb_003940_040 0.0928719123 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000095_080 0.0931644823 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
15 Hb_086085_020 0.0934625801 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
16 Hb_003697_050 0.0941387682 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
17 Hb_001348_020 0.0950110253 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
18 Hb_007416_090 0.0963794697 - - UDP-sugar transporter, putative [Ricinus communis]
19 Hb_004567_090 0.0964280447 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
20 Hb_001571_050 0.0969082602 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]

Gene co-expression network

sample Hb_000140_280 Hb_000140_280 Hb_007638_030 Hb_007638_030 Hb_000140_280--Hb_007638_030 Hb_000429_150 Hb_000429_150 Hb_000140_280--Hb_000429_150 Hb_000159_090 Hb_000159_090 Hb_000140_280--Hb_000159_090 Hb_010964_040 Hb_010964_040 Hb_000140_280--Hb_010964_040 Hb_000392_190 Hb_000392_190 Hb_000140_280--Hb_000392_190 Hb_099878_030 Hb_099878_030 Hb_000140_280--Hb_099878_030 Hb_007638_030--Hb_000159_090 Hb_007638_030--Hb_010964_040 Hb_007638_030--Hb_000429_150 Hb_004567_090 Hb_004567_090 Hb_007638_030--Hb_004567_090 Hb_002110_190 Hb_002110_190 Hb_007638_030--Hb_002110_190 Hb_002414_050 Hb_002414_050 Hb_000429_150--Hb_002414_050 Hb_000429_150--Hb_004567_090 Hb_002414_060 Hb_002414_060 Hb_000429_150--Hb_002414_060 Hb_001571_050 Hb_001571_050 Hb_000429_150--Hb_001571_050 Hb_003683_020 Hb_003683_020 Hb_000159_090--Hb_003683_020 Hb_012498_010 Hb_012498_010 Hb_000159_090--Hb_012498_010 Hb_008970_030 Hb_008970_030 Hb_000159_090--Hb_008970_030 Hb_000159_090--Hb_010964_040 Hb_010964_040--Hb_004567_090 Hb_001279_150 Hb_001279_150 Hb_010964_040--Hb_001279_150 Hb_000200_020 Hb_000200_020 Hb_010964_040--Hb_000200_020 Hb_003750_050 Hb_003750_050 Hb_010964_040--Hb_003750_050 Hb_002481_080 Hb_002481_080 Hb_010964_040--Hb_002481_080 Hb_006277_110 Hb_006277_110 Hb_000392_190--Hb_006277_110 Hb_003940_040 Hb_003940_040 Hb_000392_190--Hb_003940_040 Hb_000392_190--Hb_099878_030 Hb_000735_110 Hb_000735_110 Hb_000392_190--Hb_000735_110 Hb_009787_030 Hb_009787_030 Hb_000392_190--Hb_009787_030 Hb_099878_030--Hb_003940_040 Hb_099878_030--Hb_000159_090 Hb_099878_030--Hb_000429_150 Hb_099878_030--Hb_007638_030 Hb_162603_010 Hb_162603_010 Hb_099878_030--Hb_162603_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8166 14.5522 14.412 46.5459 22.103 42.6299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.9894 28.2419 30.7616 41.0425 27.2313

CAGE analysis