Hb_001769_080

Information

Type -
Description -
Location Contig1769: 49355-53227
Sequence    

Annotation

kegg
ID rcu:RCOM_1587330
description XPA-binding protein, putative
nr
ID XP_002437227.1
description hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
swissprot
ID -
description -
trembl
ID C5Z5J3
description Putative uncharacterized protein Sb10g023200 OS=Sorghum bicolor GN=Sb10g023200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16977: 48697-48930 , PASA_asmbl_16978: 49396-49769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001769_080 0.0 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
2 Hb_001025_110 0.0868371397 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002447_040 0.1169287459 - - Cycloartenol-C-24-methyltransferase -like protein [Gossypium arboreum]
4 Hb_158062_010 0.1218874958 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
5 Hb_001454_400 0.1267827537 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
6 Hb_140291_010 0.1273936143 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
7 Hb_000270_630 0.1275330367 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
8 Hb_184570_010 0.1292656376 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
9 Hb_004897_020 0.1296273375 - - PREDICTED: (-)-germacrene D synthase-like [Populus euphratica]
10 Hb_010691_060 0.1298230652 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
11 Hb_000676_080 0.1310304877 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
12 Hb_005754_010 0.1312687594 - - hypothetical protein POPTR_0660s00210g [Populus trichocarpa]
13 Hb_000003_160 0.1315872108 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
14 Hb_040262_010 0.1336413017 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
15 Hb_012799_130 0.133644205 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
16 Hb_004934_070 0.1370294394 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
17 Hb_002374_020 0.1380980584 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
18 Hb_002271_020 0.1386688661 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
19 Hb_034552_030 0.1388434328 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
20 Hb_002687_080 0.1389668585 - - hypothetical protein JCGZ_06535 [Jatropha curcas]

Gene co-expression network

sample Hb_001769_080 Hb_001769_080 Hb_001025_110 Hb_001025_110 Hb_001769_080--Hb_001025_110 Hb_002447_040 Hb_002447_040 Hb_001769_080--Hb_002447_040 Hb_158062_010 Hb_158062_010 Hb_001769_080--Hb_158062_010 Hb_001454_400 Hb_001454_400 Hb_001769_080--Hb_001454_400 Hb_140291_010 Hb_140291_010 Hb_001769_080--Hb_140291_010 Hb_000270_630 Hb_000270_630 Hb_001769_080--Hb_000270_630 Hb_003641_060 Hb_003641_060 Hb_001025_110--Hb_003641_060 Hb_022181_030 Hb_022181_030 Hb_001025_110--Hb_022181_030 Hb_033834_030 Hb_033834_030 Hb_001025_110--Hb_033834_030 Hb_000785_080 Hb_000785_080 Hb_001025_110--Hb_000785_080 Hb_000302_310 Hb_000302_310 Hb_001025_110--Hb_000302_310 Hb_002447_040--Hb_000270_630 Hb_002374_020 Hb_002374_020 Hb_002447_040--Hb_002374_020 Hb_011671_040 Hb_011671_040 Hb_002447_040--Hb_011671_040 Hb_000299_040 Hb_000299_040 Hb_002447_040--Hb_000299_040 Hb_002671_100 Hb_002671_100 Hb_002447_040--Hb_002671_100 Hb_000205_300 Hb_000205_300 Hb_158062_010--Hb_000205_300 Hb_007059_010 Hb_007059_010 Hb_158062_010--Hb_007059_010 Hb_000146_050 Hb_000146_050 Hb_158062_010--Hb_000146_050 Hb_004310_020 Hb_004310_020 Hb_158062_010--Hb_004310_020 Hb_003964_070 Hb_003964_070 Hb_158062_010--Hb_003964_070 Hb_003549_150 Hb_003549_150 Hb_158062_010--Hb_003549_150 Hb_011970_030 Hb_011970_030 Hb_001454_400--Hb_011970_030 Hb_003878_010 Hb_003878_010 Hb_001454_400--Hb_003878_010 Hb_000085_180 Hb_000085_180 Hb_001454_400--Hb_000085_180 Hb_000640_240 Hb_000640_240 Hb_001454_400--Hb_000640_240 Hb_024071_020 Hb_024071_020 Hb_001454_400--Hb_024071_020 Hb_000960_060 Hb_000960_060 Hb_001454_400--Hb_000960_060 Hb_096490_020 Hb_096490_020 Hb_140291_010--Hb_096490_020 Hb_041392_010 Hb_041392_010 Hb_140291_010--Hb_041392_010 Hb_002007_180 Hb_002007_180 Hb_140291_010--Hb_002007_180 Hb_000416_070 Hb_000416_070 Hb_140291_010--Hb_000416_070 Hb_000812_040 Hb_000812_040 Hb_140291_010--Hb_000812_040 Hb_003656_140 Hb_003656_140 Hb_140291_010--Hb_003656_140 Hb_000523_050 Hb_000523_050 Hb_000270_630--Hb_000523_050 Hb_002946_160 Hb_002946_160 Hb_000270_630--Hb_002946_160 Hb_000009_480 Hb_000009_480 Hb_000270_630--Hb_000009_480 Hb_103012_010 Hb_103012_010 Hb_000270_630--Hb_103012_010 Hb_003813_130 Hb_003813_130 Hb_000270_630--Hb_003813_130 Hb_040262_010 Hb_040262_010 Hb_000270_630--Hb_040262_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97364 0.802436 1.55424 2.11247 1.63527 3.21445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95161 1.98908 0.613788 1.93584 0.226948

CAGE analysis