Hb_001025_110

Information

Type -
Description -
Location Contig1025: 98739-103274
Sequence    

Annotation

kegg
ID rcu:RCOM_1509610
description hypothetical protein
nr
ID XP_002511353.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAX8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1509610 PE=4 SV=1
Gene Ontology
ID GO:0006310
description probable kinetochore protein spc25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01087: 100607-103157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001025_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001769_080 0.0868371397 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
3 Hb_003641_060 0.0987887669 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
4 Hb_022181_030 0.1057490919 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
5 Hb_033834_030 0.108714952 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
6 Hb_000785_080 0.1099584281 - - PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
7 Hb_000302_310 0.1124248782 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
8 Hb_004934_070 0.1191631692 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
9 Hb_001051_080 0.1196159268 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
10 Hb_005754_010 0.1197587787 - - hypothetical protein POPTR_0660s00210g [Populus trichocarpa]
11 Hb_004881_020 0.1216294042 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
12 Hb_000676_080 0.1216827013 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
13 Hb_000020_150 0.1218217272 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
14 Hb_001123_030 0.1223937763 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_006588_070 0.1227068723 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
16 Hb_158062_010 0.1231829195 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
17 Hb_106552_020 0.1234504464 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
18 Hb_156825_010 0.1239172543 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
19 Hb_001143_180 0.1257397652 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
20 Hb_000120_430 0.1258530012 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_001025_110 Hb_001025_110 Hb_001769_080 Hb_001769_080 Hb_001025_110--Hb_001769_080 Hb_003641_060 Hb_003641_060 Hb_001025_110--Hb_003641_060 Hb_022181_030 Hb_022181_030 Hb_001025_110--Hb_022181_030 Hb_033834_030 Hb_033834_030 Hb_001025_110--Hb_033834_030 Hb_000785_080 Hb_000785_080 Hb_001025_110--Hb_000785_080 Hb_000302_310 Hb_000302_310 Hb_001025_110--Hb_000302_310 Hb_002447_040 Hb_002447_040 Hb_001769_080--Hb_002447_040 Hb_158062_010 Hb_158062_010 Hb_001769_080--Hb_158062_010 Hb_001454_400 Hb_001454_400 Hb_001769_080--Hb_001454_400 Hb_140291_010 Hb_140291_010 Hb_001769_080--Hb_140291_010 Hb_000270_630 Hb_000270_630 Hb_001769_080--Hb_000270_630 Hb_063716_080 Hb_063716_080 Hb_003641_060--Hb_063716_080 Hb_003641_060--Hb_000785_080 Hb_004881_020 Hb_004881_020 Hb_003641_060--Hb_004881_020 Hb_002255_030 Hb_002255_030 Hb_003641_060--Hb_002255_030 Hb_010931_040 Hb_010931_040 Hb_003641_060--Hb_010931_040 Hb_187739_020 Hb_187739_020 Hb_003641_060--Hb_187739_020 Hb_001357_150 Hb_001357_150 Hb_022181_030--Hb_001357_150 Hb_007451_010 Hb_007451_010 Hb_022181_030--Hb_007451_010 Hb_022132_050 Hb_022132_050 Hb_022181_030--Hb_022132_050 Hb_001123_030 Hb_001123_030 Hb_022181_030--Hb_001123_030 Hb_002119_080 Hb_002119_080 Hb_022181_030--Hb_002119_080 Hb_006588_070 Hb_006588_070 Hb_022181_030--Hb_006588_070 Hb_001051_080 Hb_001051_080 Hb_033834_030--Hb_001051_080 Hb_001143_180 Hb_001143_180 Hb_033834_030--Hb_001143_180 Hb_005337_090 Hb_005337_090 Hb_033834_030--Hb_005337_090 Hb_002175_030 Hb_002175_030 Hb_033834_030--Hb_002175_030 Hb_000120_430 Hb_000120_430 Hb_033834_030--Hb_000120_430 Hb_000020_150 Hb_000020_150 Hb_033834_030--Hb_000020_150 Hb_004934_070 Hb_004934_070 Hb_000785_080--Hb_004934_070 Hb_000083_160 Hb_000083_160 Hb_000785_080--Hb_000083_160 Hb_003010_020 Hb_003010_020 Hb_000785_080--Hb_003010_020 Hb_000038_080 Hb_000038_080 Hb_000785_080--Hb_000038_080 Hb_000785_080--Hb_004881_020 Hb_001214_060 Hb_001214_060 Hb_000302_310--Hb_001214_060 Hb_002681_090 Hb_002681_090 Hb_000302_310--Hb_002681_090 Hb_001860_030 Hb_001860_030 Hb_000302_310--Hb_001860_030 Hb_000035_470 Hb_000035_470 Hb_000302_310--Hb_000035_470 Hb_004319_080 Hb_004319_080 Hb_000302_310--Hb_004319_080 Hb_000163_220 Hb_000163_220 Hb_000302_310--Hb_000163_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.13257 5.70828 6.82381 7.84634 6.13457 13.5364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.55138 6.82803 1.9993 7.04855 1.96523

CAGE analysis