Hb_000168_010

Information

Type -
Description -
Location Contig168: 5678-7317
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa003450mg
description hypothetical protein
nr
ID XP_011024367.1
description PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID M5X2K2
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003450mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000168_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
2 Hb_000215_310 0.1103375396 - - -
3 Hb_099116_010 0.125718045 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004040_030 0.1279791229 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
5 Hb_004466_060 0.1280779919 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
6 Hb_000586_030 0.1375575161 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
7 Hb_002611_020 0.1517594829 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
8 Hb_143629_130 0.1560502466 - - unnamed protein product [Coffea canephora]
9 Hb_009529_040 0.1598331343 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
10 Hb_000603_070 0.1606115888 - - -
11 Hb_089202_010 0.1612759912 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
12 Hb_006274_040 0.1632105931 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
13 Hb_088163_010 0.1633813137 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
14 Hb_100137_010 0.1634221016 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
15 Hb_002611_030 0.1645850465 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
16 Hb_007456_020 0.1656519553 - - unknown [Lotus japonicus]
17 Hb_075764_010 0.1675058722 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
18 Hb_000074_060 0.1677947367 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
19 Hb_002477_050 0.168387581 - - unnamed protein product [Coffea canephora]
20 Hb_138475_010 0.1690878864 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Populus euphratica]

Gene co-expression network

sample Hb_000168_010 Hb_000168_010 Hb_000215_310 Hb_000215_310 Hb_000168_010--Hb_000215_310 Hb_099116_010 Hb_099116_010 Hb_000168_010--Hb_099116_010 Hb_004040_030 Hb_004040_030 Hb_000168_010--Hb_004040_030 Hb_004466_060 Hb_004466_060 Hb_000168_010--Hb_004466_060 Hb_000586_030 Hb_000586_030 Hb_000168_010--Hb_000586_030 Hb_002611_020 Hb_002611_020 Hb_000168_010--Hb_002611_020 Hb_002477_050 Hb_002477_050 Hb_000215_310--Hb_002477_050 Hb_000603_070 Hb_000603_070 Hb_000215_310--Hb_000603_070 Hb_038237_010 Hb_038237_010 Hb_000215_310--Hb_038237_010 Hb_001195_160 Hb_001195_160 Hb_000215_310--Hb_001195_160 Hb_090158_010 Hb_090158_010 Hb_000215_310--Hb_090158_010 Hb_007456_020 Hb_007456_020 Hb_099116_010--Hb_007456_020 Hb_004881_030 Hb_004881_030 Hb_099116_010--Hb_004881_030 Hb_003780_020 Hb_003780_020 Hb_099116_010--Hb_003780_020 Hb_000004_020 Hb_000004_020 Hb_099116_010--Hb_000004_020 Hb_099116_010--Hb_000586_030 Hb_007286_020 Hb_007286_020 Hb_004040_030--Hb_007286_020 Hb_003052_180 Hb_003052_180 Hb_004040_030--Hb_003052_180 Hb_000035_330 Hb_000035_330 Hb_004040_030--Hb_000035_330 Hb_143629_130 Hb_143629_130 Hb_004040_030--Hb_143629_130 Hb_002781_030 Hb_002781_030 Hb_004040_030--Hb_002781_030 Hb_000258_240 Hb_000258_240 Hb_004040_030--Hb_000258_240 Hb_000053_030 Hb_000053_030 Hb_004466_060--Hb_000053_030 Hb_100137_010 Hb_100137_010 Hb_004466_060--Hb_100137_010 Hb_089202_010 Hb_089202_010 Hb_004466_060--Hb_089202_010 Hb_002611_030 Hb_002611_030 Hb_004466_060--Hb_002611_030 Hb_002562_110 Hb_002562_110 Hb_004466_060--Hb_002562_110 Hb_003606_060 Hb_003606_060 Hb_000586_030--Hb_003606_060 Hb_038564_010 Hb_038564_010 Hb_000586_030--Hb_038564_010 Hb_000586_030--Hb_003780_020 Hb_012678_010 Hb_012678_010 Hb_000586_030--Hb_012678_010 Hb_001894_070 Hb_001894_070 Hb_000586_030--Hb_001894_070 Hb_000230_180 Hb_000230_180 Hb_002611_020--Hb_000230_180 Hb_181328_010 Hb_181328_010 Hb_002611_020--Hb_181328_010 Hb_002400_330 Hb_002400_330 Hb_002611_020--Hb_002400_330 Hb_002122_010 Hb_002122_010 Hb_002611_020--Hb_002122_010 Hb_005170_010 Hb_005170_010 Hb_002611_020--Hb_005170_010 Hb_000696_010 Hb_000696_010 Hb_002611_020--Hb_000696_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.86197 0.882314 1.28686 7.76576 0.716983 5.63841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23825 1.55676 1.50013 3.68083 1.97029

CAGE analysis