Hb_003606_060

Information

Type -
Description -
Location Contig3606: 101134-104520
Sequence    

Annotation

kegg
ID sly:101249169
description uncharacterized LOC101249169
nr
ID XP_012092075.1
description PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LJ52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19485 PE=4 SV=1
Gene Ontology
ID GO:0010207
description porphobilinogen deaminase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37157: 100651-103967
cDNA
(Sanger)
(ID:Location)		 019_C08.ab1: 100651-101135 , 021_E11.ab1: 100651-103967

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003606_060 0.0 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
2 Hb_000525_090 0.1247573698 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
3 Hb_000586_030 0.1253044202 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
4 Hb_002200_040 0.1288737825 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
5 Hb_004046_030 0.1320513051 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
6 Hb_000107_110 0.1343166669 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000019_180 0.1378867779 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
8 Hb_001894_070 0.1401714587 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
9 Hb_004303_040 0.1434525567 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
10 Hb_004881_030 0.1444735674 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
11 Hb_170138_010 0.1450138935 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002481_060 0.1452606473 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
13 Hb_012022_050 0.145589886 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
14 Hb_003206_110 0.1461302145 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
15 Hb_006277_010 0.148609903 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
16 Hb_000240_030 0.150692387 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006683_070 0.154430289 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
18 Hb_004317_060 0.1547731127 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
19 Hb_000946_110 0.1548458534 - - GTP cyclohydrolase I, putative [Ricinus communis]
20 Hb_004935_060 0.1555406714 - - Uncharacterized protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_003606_060 Hb_003606_060 Hb_000525_090 Hb_000525_090 Hb_003606_060--Hb_000525_090 Hb_000586_030 Hb_000586_030 Hb_003606_060--Hb_000586_030 Hb_002200_040 Hb_002200_040 Hb_003606_060--Hb_002200_040 Hb_004046_030 Hb_004046_030 Hb_003606_060--Hb_004046_030 Hb_000107_110 Hb_000107_110 Hb_003606_060--Hb_000107_110 Hb_000019_180 Hb_000019_180 Hb_003606_060--Hb_000019_180 Hb_007383_020 Hb_007383_020 Hb_000525_090--Hb_007383_020 Hb_003206_110 Hb_003206_110 Hb_000525_090--Hb_003206_110 Hb_000525_090--Hb_004046_030 Hb_000309_050 Hb_000309_050 Hb_000525_090--Hb_000309_050 Hb_002481_060 Hb_002481_060 Hb_000525_090--Hb_002481_060 Hb_000613_070 Hb_000613_070 Hb_000525_090--Hb_000613_070 Hb_038564_010 Hb_038564_010 Hb_000586_030--Hb_038564_010 Hb_000168_010 Hb_000168_010 Hb_000586_030--Hb_000168_010 Hb_003780_020 Hb_003780_020 Hb_000586_030--Hb_003780_020 Hb_012678_010 Hb_012678_010 Hb_000586_030--Hb_012678_010 Hb_001894_070 Hb_001894_070 Hb_000586_030--Hb_001894_070 Hb_002079_050 Hb_002079_050 Hb_002200_040--Hb_002079_050 Hb_000210_240 Hb_000210_240 Hb_002200_040--Hb_000210_240 Hb_006274_040 Hb_006274_040 Hb_002200_040--Hb_006274_040 Hb_004303_040 Hb_004303_040 Hb_002200_040--Hb_004303_040 Hb_008447_030 Hb_008447_030 Hb_002200_040--Hb_008447_030 Hb_004046_030--Hb_003206_110 Hb_006277_010 Hb_006277_010 Hb_004046_030--Hb_006277_010 Hb_170138_010 Hb_170138_010 Hb_004046_030--Hb_170138_010 Hb_000185_220 Hb_000185_220 Hb_004046_030--Hb_000185_220 Hb_000800_090 Hb_000800_090 Hb_004046_030--Hb_000800_090 Hb_012678_020 Hb_012678_020 Hb_004046_030--Hb_012678_020 Hb_000107_110--Hb_001894_070 Hb_004881_030 Hb_004881_030 Hb_000107_110--Hb_004881_030 Hb_010042_020 Hb_010042_020 Hb_000107_110--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_000107_110--Hb_033152_070 Hb_001104_130 Hb_001104_130 Hb_000107_110--Hb_001104_130 Hb_003052_180 Hb_003052_180 Hb_000107_110--Hb_003052_180 Hb_003305_040 Hb_003305_040 Hb_000019_180--Hb_003305_040 Hb_000019_180--Hb_000800_090 Hb_002392_010 Hb_002392_010 Hb_000019_180--Hb_002392_010 Hb_000019_180--Hb_006277_010 Hb_005701_120 Hb_005701_120 Hb_000019_180--Hb_005701_120 Hb_002110_100 Hb_002110_100 Hb_000019_180--Hb_002110_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17643 3.27912 5.55265 19.1132 3.22454 13.117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.24796 6.80269 8.24897 9.82033 20.3721

CAGE analysis